trna modifier review - Githubissues

pombase / curation

PomBase curation

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trna modifier review #1376

Closed ValWood closed 7 years ago

ValWood commented 7 years ago

yesterday trna modifiation

ValWood commented 7 years ago

[x] SPAC18B11.02c = pus9
[x] SPAC22F3.15 = aim41
[x] SPBC30B4.06c = ips1, synonym mto1 (because we cant use mto1)
[x] SPAC2C4.06c= rcm1
[x] SPBC19C7.08c = ppm2

the elongator annotation will improve when my session comes through

ValWood commented 7 years ago

can these tRNA modification, be more specific

[x] dus1
[x] dus2
[x] dus3
[x] dus4
[x] kti2
[ ] tad1
[x] tad2
[x] tad3
[ ] tan1
[ ] thg1
[ ] tit1
[x] trm8 redundant annotation from F-P links

ValWood commented 7 years ago

[x] kti2 -> tRNA wobble uridine modification
[x] mss1 mitochondrial tRNA wobble uridine modification ISO S000004625 product -> tRNA carboxymethylaminomethyl modification

ValWood commented 7 years ago

tRNA metabolic process review

[x] cbf5 , pseudouridylate synthase
[ ] This isn't tRNA modifier. There was an NAS> I think I killed it but double check
[x] dtd1 ,
[x] SPBC1861.05

ValWood commented 7 years ago

Looking much better: even better

ValWood commented 7 years ago

Only 2 annotations to just "modification" Some of the methylases could be more specific but no hurry will revisit later. its a nice example term anyway...