search

pombase / curation

PomBase curation
7 stars 0 forks source link

MGA repository ( and lift over) #1736

Open ValWood opened 6 years ago

ValWood commented 6 years ago

we should look at this...

  MGA repository: a curated data resource for ChIP-seq and other genome annotated data.
  Dréos R, Ambrosini G, Groux R, Périer RC, Bucher P.
  Nucleic Acids Res. 2017 Oct 24. doi: 10.1093/nar/gkx995. [Epub ahead of print]
  PMID: 29069466
ValWood commented 6 years ago

http://ccg.vital-it.ch/mga/ https://www.ncbi.nlm.nih.gov/pubmed/29069466

ChIP-seq 349
ChIP-seq-invitro -
ChIP-seq-peak -
Transcription Profiling 1
DNase FAIRE etc. 8
DNA methylation -
Genome annotation 4
Sequence-derived 9
Total # of Samples 371

I haven't looked in detail, but they also do "liftover" service We might be able to wrk with them in dataset preparation?