FAQ fodder - Githubissues

pombase-admin commented 12 years ago

In this RT item...

accessing LTRs, transposons https://rt.sanger.ac.uk/Ticket/Display.html?id=269629

and an item for viewing contigs in artemis

Original comment by: ValWood

pombase-admin commented 12 years ago

I've put a transposon FAQ on dev -- let me know if it needs any edits before I copy it over to www.

http://dev.pombase.org/faqs/how-can-i-find-transposons-s-pombe-genome

I haven't done one for contigs in Artemis because I don't know what you want it to say. I've only got this so far (for the answer; don't even have wording for the Q):

Download and install Artemis from http://www.sanger.ac.uk/resources/software/artemis/

Read in the EMBL format files of sequence and annotation; these are available from ftp://ftp.sanger.ac.uk/pub/yeast/pombe/Chromosome_contigs (there is also a link on the DNA Datasets page).

Original comment by: mah11

pombase-admin commented 12 years ago

Looks good,

I did the text tweaks and fixed the psudoes so they are just represented as frameshifted CDS.

Will get around the LTRs at some point.....

Original comment by: ValWood

pombase-admin commented 12 years ago

ok, on www

Original comment by: mah11

pombase-admin commented 12 years ago

status: open --> closed

Original comment by: ValWood

pombase / curation

FAQ fodder #189