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cytoplasmic translation refinement #285

Closed pombase-admin closed 9 years ago

pombase-admin commented 13 years ago

chromosome1.contig:FT /GO="aspect=P; term=regulation of translation in response

All cytoplasmic translation genes should not have a cytoplasmic translation annotation ny NAS in addition to manual translation annotations The genes annotated to the terms below could be reannotated as the first priority to the cytoplasmic equivalents (checking that they should be regulation terms)

chromosome1.contig:FT /GO="aspect=P; term=regulation of translational initiation

chromosome1.contig:FT /GO="aspect=P; term=regulation of translational chromosome1.contig:FT /GO="aspect=P; term=positive regulation of translational chromosome1.contig:FT /GO="aspect=P; term=negative regulation of translational

chromosome2.contig:FT /GO="aspect=P; term=regulation of translational fidelity;

Original comment by: ValWood

pombase-admin commented 13 years ago

Original comment by: ValWood

pombase-admin commented 13 years ago

these genes SPAC24B11.06c sty1 MAP kinase Sty1 SPBC409.07c wis1 MAP kinase kinase Wis1 SPAC4F8.03 sdo1 SBDS family ribosome maturation protein Sdo1 (predicted) SPAC18G6.05c translation elongation regulator Gcn1 (predicted) SPAC688.14 set13 ribosome L32 lysine methyltransferase Set13 SPCC5E4.07 rpl2802 60S ribosomal protein L27/L28 SPCC1259.01c rps1802 40S ribosomal protein S18 (predicted) SPBC25B2.09c mrs1 mitochondrial and cytoplasmic arginine-tRNA ligase Rrs1/Mrs1 (predicted) SPAC27E2.02 IMPACT homolog, translational regulator (predicted) SPBC14C8.09c IMPACT domain protein, involved in translation (predicted)

Original comment by: ValWood

pombase-admin commented 13 years ago

are cytoplasmic and mitochondrial ribosome nutually exclusive?

Original comment by: ValWood

pombase-admin commented 11 years ago

Ticket moved from /p/pombase/go-annotation/44/

Original comment by: mah11

pombase-admin commented 10 years ago

Original comment by: ValWood

pombase-admin commented 10 years ago

Most are mapped to specific terms. Remainder will be sorted as I add to the "GO terms not to annotate to file"

Original comment by: ValWood