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transposon numbers #323

Closed pombase-admin closed 9 years ago

pombase-admin commented 10 years ago

There are 22 transposon features in the gff file: but I think there are only 14 transposons (maybe more with pseudo, but not this many)

III . repeat_region 254442 256307 . - . description=TF2 III . repeat_region 778082 782301 . - . description=TF2 III . repeat_region 1196077 1196481 . - . description=TF2 III . repeat_region 2320269 2324487 . - . description=TF2 II . repeat_region 1625815 1626154 . - . description=TF2 II . repeat_region 1812697 1816914 . - . description=TF2 II . repeat_region 1965223 1969441 . + . description=TF2 II . repeat_region 4414489 4418709 . + . description=TF2 I . repeat_region 1465680 1468195 . + . description=TF2 I . repeat_region 1468196 1469899 . + . description=TF2 I . repeat_region 1564165 1568384 . - . description=TF2 I . repeat_region 2927153 2931372 . - . description=TF2 I . repeat_region 2939701 2940062 . - . description=TF2 I . repeat_region 2940231 2941944 . - . description=TF2 I . repeat_region 3331653 3331756 . - . description=TF2 I . repeat_region 3361496 3365714 . - . description=TF2 I . repeat_region 3996372 4000591 . - . description=TF2 I . repeat_region 4022325 4026544 . + . description=TF2 I . repeat_region 5191093 5195312 . - . description=TF2 I . repeat_region 5195660 5199879 . - . description=TF2 I . repeat_region 5543198 5543248 . - . description=TF2 I . repeat_region 5543243 5543480 . + . description=TF2

Original comment by: ValWood

pombase-admin commented 10 years ago

Original comment by: ValWood

pombase-admin commented 10 years ago

Original comment by: ValWood

pombase-admin commented 10 years ago

This is an Ensembl pipeline issue: https://www.ebi.ac.uk/panda/jira/browse/PB-1579#comment-91868

Original comment by: ValWood