next orthologs pombe-> - Githubissues

ValWood commented 2 years ago

Alpha Fold candidates (BH data not reciprocal) Usp108 ~P57723. (PCBP4)~ cant be sure, is closer to rnc1 Usp109 P31483 (TIA1/RBM44) candidates

(different predictores give different results, probably 1:many"

ValWood commented 2 years ago

[x] Orthologs SPCC417.08 Tef3 -ABCF2 ABCF3
[x] no disease associations

ValWood commented 2 years ago

[ ] Sec67 ortholog, promising
[ ] Pga2 (extend orthology?)
[ ] spo12
[ ] Ynl097c-b lysine bio
[ ] Is AKNAP (CG-NAP0 sid4?
[ ] check SF3B3

Jackhmmr

sp|Q00059-2|TFAM_HUMAN Isoform 2 of Transcription factor A, mitochondrial OS=Homo sapiens OX=9606 GN=TFAM MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ LTPSQIMSLEKEIMDKHLKRKAMTKKKEKLKTVKENWKNLSDSEKELYIQHAKEDETRYH NEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEEC

[ ] vma22 unable to find pombe orthlog of S. cerevisiae vma22 but found human ortholog CCDC115 https://www.uniprot.org/uniprotkb/Q96NT0 Accessory component of the proton-transporting vacuolar (V)-ATPase protein pump supported by https://pubmed.ncbi.nlm.nih.gov/28296633/

ValWood commented 2 years ago

hpz1 check

pombase / curation

next orthologs pombe-> #3342