pombase / curation

PomBase curation
7 stars 0 forks source link

GOA logs extensions #3697

Closed ValWood closed 2 months ago

ValWood commented 2 months ago

Line 1799: WARNING Annotation_extension failed validation [[GO:0034470] [has_input(PomBase:SPNCRNA.214)] [Invalid domain for has_input: GO:0034470]] Line 2389: WARNING Annotation_extension failed validation [[GO:0061630] [has_input(PomBase:SPAC31G5.18c),part_of(GO:0071596)] [Unknown/unsupported relation: null]] Line 3509: WARNING Annotation_extension failed validation [[GO:0106166] [happens_during(GO:0000087),has_input(GO:0044732)] [Invalid range for has_input: GO:0044732]] Line 8176: WARNING Annotation_extension failed validation [[GO:0071944] [existence_overlaps(GO:0072690)] [Unknown/unsupported relation: null]] Line 10024: WARNING Annotation_extension failed validation [[GO:0140954] [has_input(PomBase:SPBC8D2.04),part_of(GO:0140673)] [Unknown/unsupported relation: null]] Line 11922: WARNING Annotation_extension failed validation [[GO:0000785] [coincident_with(GO:0000781),existence_overlaps(GO:0000084)] [Invalid range for coincident_with: GO:0000781]] Line 14263: ERROR Annotation_extension can not be supplied with NOT-qualified annotations [existence_overlaps(GO:0000087)] Line 18354: WARNING Annotation_extension failed validation [[GO:0004693] [happens_during(GO:0000087),has_input(PomBase:SPAC31A2.14)] [Index 26 out of bounds for length 26]] Line 18498: WARNING Annotation_extension failed validation [[GO:0004693] [has_input(PomBase:SPBC16G5.15c),part_of(GO:0031138)] [Range [10, 30) out of bounds for length 25]] Line 18501: WARNING Annotation_extension failed validation [[GO:0004693] [happens_during(GO:0000087),has_input(PomBase:SPCC1322.12c),part_of(GO:0007094)] [Unknown/unsupported relation: happens_d]] Line 18514: WARNING Annotation_extension failed validation [[GO:0004693] [happens_during(GO:0000087),has_input(PomBase:SPCC962.02c),part_of(GO:0140429)] [Unknown/unsupported relation: happens_d]] Line 19262: WARNING Annotation_extension failed validation [[GO:0140475] [has_input(GO:0005874)] [Invalid range for has_input: GO:0005874]] Line 23248: WARNING Annotation_extension failed validation [[GO:0001228] [happens_during(GO:0071456),has_input(PomBase:SPCP31B10.04)] [Unknown/unsupported relation: null]] Line 27854: WARNING Annotation_extension failed validation [[GO:0005634] [existence_overlaps(PBQ:0000003)] [Invalid range for existence_overlaps: PBQ:0000003]] Line 31551: WARNING Annotation_extension failed validation [[GO:0071944] [existence_overlaps(GO:0072690)] [Unknown/unsupported relation: null]] Line 37586: WARNING Annotation_extension failed validation [[GO:0097641] [part_of(GO:0097641)] [Invalid range for part_of: GO:0097641]] Number of annotations with error "Annotation_extension can not be supplied with NOT-qualified annotations": 1

ValWood commented 2 months ago

Closing, I think the errors are reporting incorrectly. reported to Alex