paper to process skp1 (interactors) PMID: 15147268

ValWood commented 8 years ago

Hasn't been through canto

http://www.ncbi.nlm.nih.gov/pubmed?term=15147268

binding of skp1 with:

cul1/SPAC17G6.17/O13790 3 pof5/SPAC6F6.02c/O14235 3 pof6/SPCC18.04/O74854 3 pof3/SPCC338.16/O74991 3 pof1/SPAC57A10.05c/P87053 3 pof10/ SPBC1703.06/Q9P7W4 3

pof2/ SPBC25B2.11/ O74783 2 uniprot/PomBase pof4 SPBC29A3.08/O59671 2 uniprot/PomBase pof9/SPBC3H7.06c/O74381 2 uniprot/PomBase pof12/ SPBC56F2.01/ O60053 2 uniprot/PomBase pof13/SPBC1271.01c O94334 2 uniprot/PomBase pof11/ SPAC29E6.01 Q09855 2 uniprot/PomBase fbh1 SPBC336.01/ Q9USU3 1 uniprot/PomBase

pop2/ SPAC4D7.03/ O14170 2 uniprot/intact pop1/ SPBC1718.01/P87060 2uniprot/intact pof7 O74531 2 uniprot/intact

pof8/ SPAC17G6.17/O13795 1 uniprot (pombase made this annotation but it isn’t in goa)

ValWood commented 8 years ago

It seems that some of the discrepancies we have made the annotation, but the reciprocal way (and currently reciprocal annotations are not inferred)

will be addressed by https://github.com/pombase/pombase-chado/issues/433

ValWood commented 8 years ago

transferred from duplicate https://github.com/pombase/curation/issues/736

ValWood commented 7 years ago

Among these components Skp1 has a unique function, it acts as a bridge between the F-box protein and Cullin-1 [8]

ValWood commented 4 years ago

note from duplicate https://github.com/pombase/curation/issues/2687

SOURCE ENTITY TYPE ENTITY ID GO ID EVIDENCE REFERENCE WITH/FROM EXTENSION SPOM protein Q9Y709 GO:0061630 ECO:0000315 (IMP) PMID:20230746 has_input(PomBase:SPAPB2B4.03),part_of(GO:0031146)

Query details: I think this annotation should be removed. Skp1 is a substrate recognition component/adapter of the SCF E3 ubiquitin-protein ligase complex - it doesn't have ligase activity itself - so I believe this term is inappropriate under the current annotation rules.

pombase / curation

paper to process skp1 (interactors) PMID: 15147268 #859