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Fission Yeast Phenotype Ontology
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FYPO:0001226 - mononucleate with mislocalized septum #1012

Closed fypoadmin closed 9 years ago

fypoadmin commented 11 years ago

Obviously this must be inviable (and this is in the parentage), but can it be included in the def? I just got confused by it....

Original comment by: ValWood

fypoadmin commented 11 years ago

Should it also specify monoseptate? It doesn't (by text def, parentage, or xp) because I didn't know whether it was always just one septum back when I added the term.

note to self: also update xp

Original comment by: mah11

fypoadmin commented 11 years ago

I took this to mean a single septum .....If it had more than one I would have specified multinucleate.....Antonia?

Original comment by: ValWood

fypoadmin commented 11 years ago

Note this doesn't rule out the existiance of multiseptate/mononucleate.....

Original comment by: ValWood

fypoadmin commented 11 years ago

hmm, not sure?

Original comment by: Antonialock

fypoadmin commented 11 years ago

OK, I just checked, there are only 3 genes annotated to this term (cdc16, far10 and tbf1) Tbf1 is already to a monoseptate child, and the other two are monospetate, see below

cdc16 PMID:762020 type I cells (85% of the population), which complete nuclear division and then form up to five septa between the divided nuclei; and (ii) type II cells (15% of the population), which form an asymmetrically situated septum in the absence of any nuclear division.

far10 PMID:22119525 The presence of uninucleate cells with a septum and binucleate cells with more than one septum suggested

So we'll assume yes and need new terms for any mononucleate multispetate

Original comment by: ValWood

fypoadmin commented 11 years ago

Original comment by: mah11

fypoadmin commented 11 years ago

renamed FYPO:0001226 to 'inviable mononucleate vegetative cell with mislocalized septum' adjusted synonyms to match

new ticket if/when you need other terms (e.g. like this but multiseptate)

Original comment by: mah11