decreased amount of stuff

pombase / fypo

Fission Yeast Phenotype Ontology

Creative Commons Attribution 4.0 International

15 stars 6 forks source link

decreased amount of stuff #153

Closed fypoadmin closed 9 years ago

fypoadmin commented 12 years ago

Hi Midori,

in this particular experiment, they (..the researchers) show that their mutant contain reduced levels of PI-3-P (through smashing the cells up and doing chromatography).

Not sure what wording would be best to describe this; decreased accumulation of PI-3-P ? (there is already terms for decreased protein accumulation or decreased RNA accumulation, so perhaps we could have one for decreased accumulation of metabolite as a parent term to this term?)

Original comment by: Antonialock

fypoadmin commented 12 years ago

Also increased accumulation (or similar) of PI-4-P

Original comment by: Antonialock

fypoadmin commented 12 years ago

might as well do increased & decreased accumulation of "whatever substance" (of course I'll have to be boring and leave out the "whatever" in the actual ontology)

Original comment by: mah11

fypoadmin commented 12 years ago

added altered level of substance in cell FYPO:0000989 increased level of substance in cell FYPO:0000990 decreased level of substance in cell FYPO:0000991 altered cellular phosphatidylinositol-3-phosphate level FYPO:0000992 decreased cellular phosphatidylinositol-3-phosphate level FYPO:0000993 increased cellular phosphatidylinositol-4-phosphate level FYPO:0000994

... with various & sundry synonyms

Original comment by: mah11

fypoadmin commented 12 years ago

status: open --> open-accepted

Original comment by: mah11

fypoadmin commented 12 years ago

closing - now in curation tool

Original comment by: mah11

fypoadmin commented 12 years ago

status: open-accepted --> closed-accepted

Original comment by: mah11