increased repeat element RNA level

[fypoadmin]

are increased repeat element RNA level A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any RNA transcribed from repeat elements, such as LTRs, retrotransposons, or wtf elements, measured in a cell is higher than normal. and increased transposable element-derived small RNA level A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of small RNA (such as siRNA) derived from transposable element transcripts measured in a cell is greater than normal.

the same phenotype? also mentioning siRNA is a bit confusing (to me)?

Original comment by: Antonialock

[fypoadmin]

or does the former refer to transcription of the actual repeat sequences, and the latter transcription of the pseudogenes buried within the LTRs?

Original comment by: Antonialock

[fypoadmin]

Here I think I would avoid defining as repeat element (RNAI operates at repeative RNA, so thats sort of a given, although it isn't usually explicitly stated.

I think it might be better to do

increased transcription at LTR regions increased transcription of transposable elements increased transcription of wtf elements

if that is possible, (or something similar)...we can discuss Monday

Original comment by: ValWood

[fypoadmin]

actually now I read your second comment

increased transposable element-derived RNA level increased transposable element-derived small RNA level

might be better

Original comment by: ValWood

[fypoadmin]

• add terms for other specific repeat types
• use "repeat element" term as parent and flag not-for-direct annotation

Original comment by: mah11

[fypoadmin]

• labels: other ontology change --> other ontology change, new ontology term
• status: open --> closed
• assigned_to: Midori Harris

Original comment by: mah11

[fypoadmin]

new terms increased LTR-derived RNA level FYPO:0004342 increased wtf-derived RNA level FYPO:0004343

moves & don't-annotate done as noted

Original comment by: mah11