search

pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
15 stars 6 forks source link

levels of modified proteins #4184

Open ValWood opened 2 years ago

ValWood commented 2 years ago

decreased protein modification and decreased level of ubiquitinated protein in cell (FYPO:0005226)

These are two separate branches. I see the rationale but it might make sense to have one branch and deal with he in vitro/iVivo with appropriate evidence codes.

manulera commented 2 years ago

Pasting the tree:

graph TD;
      FYPO:0001985["<a href=https://www.pombase.org/term/FYPO:0001985>FYPO:0001985</a><br>abnormal phenotype"]-->FYPO:0003037["<a href=https://www.pombase.org/term/FYPO:0003037>FYPO:0003037</a><br>abnormal cell phenot<br>ype"];
      FYPO:0000300["<a href=https://www.pombase.org/term/FYPO:0000300>FYPO:0000300</a><br>biological process p<br>henotype"]-->FYPO:0000114["<a href=https://www.pombase.org/term/FYPO:0000114>FYPO:0000114</a><br>cellular process phe<br>notype"];
      FYPO:0000114["<a href=https://www.pombase.org/term/FYPO:0000114>FYPO:0000114</a><br>cellular process phe<br>notype"]-->FYPO:0000140["<a href=https://www.pombase.org/term/FYPO:0000140>FYPO:0000140</a><br>cellular metabolism <br>phenotype"];
      FYPO:0000991["<a href=https://www.pombase.org/term/FYPO:0000991>FYPO:0000991</a><br>decreased level of s<br>ubstance in cell"]-->FYPO:0000835["<a href=https://www.pombase.org/term/FYPO:0000835>FYPO:0000835</a><br>decreased protein le<br>vel"];
      FYPO:0000989["<a href=https://www.pombase.org/term/FYPO:0000989>FYPO:0000989</a><br>altered level of sub<br>stance in cell"]-->FYPO:0000991["<a href=https://www.pombase.org/term/FYPO:0000991>FYPO:0000991</a><br>decreased level of s<br>ubstance in cell"];
      FYPO:0000001["<a href=https://www.pombase.org/term/FYPO:0000001>FYPO:0000001</a><br>phenotype"]-->FYPO:0000002["<a href=https://www.pombase.org/term/FYPO:0000002>FYPO:0000002</a><br>cell phenotype"];
      FYPO:0000834["<a href=https://www.pombase.org/term/FYPO:0000834>FYPO:0000834</a><br>altered protein leve<br>l"]-->FYPO:0001325["<a href=https://www.pombase.org/term/FYPO:0001325>FYPO:0001325</a><br>altered protein leve<br>l during vegetative <br>growth"];
      FYPO:0000002["<a href=https://www.pombase.org/term/FYPO:0000002>FYPO:0000002</a><br>cell phenotype"]-->FYPO:0000114["<a href=https://www.pombase.org/term/FYPO:0000114>FYPO:0000114</a><br>cellular process phe<br>notype"];
      FYPO:0000002["<a href=https://www.pombase.org/term/FYPO:0000002>FYPO:0000002</a><br>cell phenotype"]-->FYPO:0003037["<a href=https://www.pombase.org/term/FYPO:0003037>FYPO:0003037</a><br>abnormal cell phenot<br>ype"];
      FYPO:0000989["<a href=https://www.pombase.org/term/FYPO:0000989>FYPO:0000989</a><br>altered level of sub<br>stance in cell"]-->FYPO:0001323["<a href=https://www.pombase.org/term/FYPO:0001323>FYPO:0001323</a><br>altered level of sub<br>stance in cell durin<br>g vegetative growth"];
      FYPO:0001323["<a href=https://www.pombase.org/term/FYPO:0001323>FYPO:0001323</a><br>altered level of sub<br>stance in cell durin<br>g vegetative growth"]-->FYPO:0001325["<a href=https://www.pombase.org/term/FYPO:0001325>FYPO:0001325</a><br>altered protein leve<br>l during vegetative <br>growth"];
      FYPO:0003037["<a href=https://www.pombase.org/term/FYPO:0003037>FYPO:0003037</a><br>abnormal cell phenot<br>ype"]-->FYPO:0000989["<a href=https://www.pombase.org/term/FYPO:0000989>FYPO:0000989</a><br>altered level of sub<br>stance in cell"];
      FYPO:0000114["<a href=https://www.pombase.org/term/FYPO:0000114>FYPO:0000114</a><br>cellular process phe<br>notype"]-->FYPO:0000628["<a href=https://www.pombase.org/term/FYPO:0000628>FYPO:0000628</a><br>abnormal cellular pr<br>ocess"];
      FYPO:0003037["<a href=https://www.pombase.org/term/FYPO:0003037>FYPO:0003037</a><br>abnormal cell phenot<br>ype"]-->FYPO:0000628["<a href=https://www.pombase.org/term/FYPO:0000628>FYPO:0000628</a><br>abnormal cellular pr<br>ocess"];
      FYPO:0000002["<a href=https://www.pombase.org/term/FYPO:0000002>FYPO:0000002</a><br>cell phenotype"]-->FYPO:0001320["<a href=https://www.pombase.org/term/FYPO:0001320>FYPO:0001320</a><br>vegetative cell phen<br>otype"];
      FYPO:0001320["<a href=https://www.pombase.org/term/FYPO:0001320>FYPO:0001320</a><br>vegetative cell phen<br>otype"]-->FYPO:0001323["<a href=https://www.pombase.org/term/FYPO:0001323>FYPO:0001323</a><br>altered level of sub<br>stance in cell durin<br>g vegetative growth"];
      FYPO:0000989["<a href=https://www.pombase.org/term/FYPO:0000989>FYPO:0000989</a><br>altered level of sub<br>stance in cell"]-->FYPO:0000834["<a href=https://www.pombase.org/term/FYPO:0000834>FYPO:0000834</a><br>altered protein leve<br>l"];
      FYPO:0000140["<a href=https://www.pombase.org/term/FYPO:0000140>FYPO:0000140</a><br>cellular metabolism <br>phenotype"]-->FYPO:0000860["<a href=https://www.pombase.org/term/FYPO:0000860>FYPO:0000860</a><br>abnormal metabolic p<br>rocess"];
      FYPO:0000628["<a href=https://www.pombase.org/term/FYPO:0000628>FYPO:0000628</a><br>abnormal cellular pr<br>ocess"]-->FYPO:0000860["<a href=https://www.pombase.org/term/FYPO:0000860>FYPO:0000860</a><br>abnormal metabolic p<br>rocess"];
      FYPO:0000835["<a href=https://www.pombase.org/term/FYPO:0000835>FYPO:0000835</a><br>decreased protein le<br>vel"]-->FYPO:0001324["<a href=https://www.pombase.org/term/FYPO:0001324>FYPO:0001324</a><br>decreased protein le<br>vel during vegetativ<br>e growth"];
      FYPO:0001324["<a href=https://www.pombase.org/term/FYPO:0001324>FYPO:0001324</a><br>decreased protein le<br>vel during vegetativ<br>e growth"]-->FYPO:0005226["<u><strong><a href=https://www.pombase.org/term/FYPO:0005226>FYPO:0005226</a><br>decreased level of u<br>biquitinated protein<br> in cell</strong></u>"];
      FYPO:0000834["<a href=https://www.pombase.org/term/FYPO:0000834>FYPO:0000834</a><br>altered protein leve<br>l"]-->FYPO:0000835["<a href=https://www.pombase.org/term/FYPO:0000835>FYPO:0000835</a><br>decreased protein le<br>vel"];
      FYPO:0000001["<a href=https://www.pombase.org/term/FYPO:0000001>FYPO:0000001</a><br>phenotype"]-->FYPO:0001985["<a href=https://www.pombase.org/term/FYPO:0001985>FYPO:0001985</a><br>abnormal phenotype"];
      FYPO:0001325["<a href=https://www.pombase.org/term/FYPO:0001325>FYPO:0001325</a><br>altered protein leve<br>l during vegetative <br>growth"]-->FYPO:0001324["<a href=https://www.pombase.org/term/FYPO:0001324>FYPO:0001324</a><br>decreased protein le<br>vel during vegetativ<br>e growth"];
      FYPO:0002494["<a href=https://www.pombase.org/term/FYPO:0002494>FYPO:0002494</a><br>abnormal protein mod<br>ification"]-->FYPO:0002498["<u><strong><a href=https://www.pombase.org/term/FYPO:0002498>FYPO:0002498</a><br>decreased protein mo<br>dification</strong></u>"];
      FYPO:0000001["<a href=https://www.pombase.org/term/FYPO:0000001>FYPO:0000001</a><br>phenotype"]-->FYPO:0000300["<a href=https://www.pombase.org/term/FYPO:0000300>FYPO:0000300</a><br>biological process p<br>henotype"];
      FYPO:0002274["<a href=https://www.pombase.org/term/FYPO:0002274>FYPO:0002274</a><br>abnormal protein met<br>abolic process"]-->FYPO:0002494["<a href=https://www.pombase.org/term/FYPO:0002494>FYPO:0002494</a><br>abnormal protein mod<br>ification"];
      FYPO:0000860["<a href=https://www.pombase.org/term/FYPO:0000860>FYPO:0000860</a><br>abnormal metabolic p<br>rocess"]-->FYPO:0002274["<a href=https://www.pombase.org/term/FYPO:0002274>FYPO:0002274</a><br>abnormal protein met<br>abolic process"];