search

pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
14 stars 6 forks source link

missing ammonium term #4282

Closed manulera closed 1 year ago

github-actions[bot] commented 1 year ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### increased cell population growth on ammonium nitrogen source `http://purl.obolibrary.org/obo/FYPO_0009051` #### Added - [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "fission_yeast_phenotype"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "PomBase:mlr"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A vegetative cell population phenotype in which cell growth is increased relative to normal in a medium containing ammonium as the nitrogen source."^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mlr"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) [id](http://www.geneontology.org/formats/oboInOwl#id) "FYPO:0009051"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) [has broad synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "increased growth on ammonium nitrogen source"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mlr"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-02-17T15:43:28Z"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) [has exact synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "increased vegetative cell growth on ammonium nitrogen source"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mlr"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased cell population growth on ammonium nitrogen source"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise."^^[string](http://www.w3.org/2001/XMLSchema#string) - Class: [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) - [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([increased cell population growth](http://purl.obolibrary.org/obo/FYPO_0003937) and ([happens_during](http://purl.obolibrary.org/obo/GOREL_0000001) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690)) and ([characteristic of](http://purl.obolibrary.org/obo/RO_0000052) some [culture medium](http://purl.obolibrary.org/obo/BTO_0000316)) and ([towards](http://purl.obolibrary.org/obo/RO_0002503) some [ammonium](http://purl.obolibrary.org/obo/CHEBI_28938)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [present](http://purl.obolibrary.org/obo/PATO_0000467))) - [increased cell population growth on ammonium nitrogen source](http://purl.obolibrary.org/obo/FYPO_0009051) SubClassOf [increased vegetative cell population growth](http://purl.obolibrary.org/obo/FYPO_0004557)
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition WARN multiple_equivalent_classes polyphosphate absent from cell owl:equivalentClass blank node INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```