pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
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‘part #4297

Closed ValWood closed 1 year ago

github-actions[bot] commented 1 year ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### abnormal histone methylation at centromere during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0007374` #### Added - [abnormal histone methylation at centromere during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0007374) SubClassOf [abnormal histone methylation at centromere during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0007374) ### abnormal initiation of premeiotic DNA replication `http://purl.obolibrary.org/obo/FYPO_0000626` #### Removed - [abnormal initiation of premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000626) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal initiation of premeiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072691"^^[string](http://www.w3.org/2001/XMLSchema#string) - [abnormal initiation of premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000626) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal meiotic DNA replication initiation"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072691"^^[string](http://www.w3.org/2001/XMLSchema#string) - [abnormal initiation of premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000626) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal initiation of meiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072691"^^[string](http://www.w3.org/2001/XMLSchema#string) - [abnormal initiation of premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000626) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abnormal premeiotic DNA replication initiation"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072691"^^[string](http://www.w3.org/2001/XMLSchema#string) #### Added - [abnormal initiation of premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000626) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal initiation of premeiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072691"^^[string](http://www.w3.org/2001/XMLSchema#string) - [abnormal initiation of premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000626) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abnormal premeiotic DNA replication initiation"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072691"^^[string](http://www.w3.org/2001/XMLSchema#string) - [abnormal initiation of premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000626) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal meiotic DNA replication initiation"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072691"^^[string](http://www.w3.org/2001/XMLSchema#string) - [abnormal initiation of premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000626) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal initiation of meiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0072691"^^[string](http://www.w3.org/2001/XMLSchema#string) ### abnormal premeiotic DNA replication `http://purl.obolibrary.org/obo/FYPO_0000625` #### Removed - [abnormal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000625) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal meiotic DNA replication"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) - [abnormal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000625) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal meiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) - [abnormal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000625) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal premeiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) #### Added - [abnormal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000625) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal meiotic DNA replication"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah"^^[string](http://www.w3.org/2001/XMLSchema#string) - [abnormal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000625) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal premeiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah"^^[string](http://www.w3.org/2001/XMLSchema#string) - [abnormal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0000625) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal meiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah"^^[string](http://www.w3.org/2001/XMLSchema#string) ### decreased histone H3-K9 methylation at centromere outer repeat during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0003096` #### Added - [decreased histone H3-K9 methylation at centromere outer repeat during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0003096) SubClassOf [abnormal histone methylation at centromere during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0007374) ### increased histone H3-K4 methylation at centromere during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0007337` #### Added - [increased histone H3-K4 methylation at centromere during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0007337) SubClassOf [abnormal histone methylation at centromere during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0007374) ### increased histone H3-K9 methylation at centromere during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0005066` #### Added - [increased histone H3-K9 methylation at centromere during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0005066) SubClassOf [abnormal histone methylation at centromere during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0007374) ### increased histone H3-K9 methylation at mating type locus during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0005065` #### Added - [increased histone H3-K9 methylation at mating type locus during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0005065) SubClassOf [abnormal histone methylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0007373) ### increased histone H3-K9 trimethylation at centromere during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0000880` #### Added - [increased histone H3-K9 trimethylation at centromere during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000880) SubClassOf [abnormal histone methylation at centromere during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0007374) ### normal premeiotic DNA replication `http://purl.obolibrary.org/obo/FYPO_0002043` #### Removed - [normal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0002043) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal premeiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) - [normal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0002043) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "normal meiotic DNA replication"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) - [normal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0002043) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "normal meiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) #### Added - [normal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0002043) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "normal meiotic DNA replication"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah"^^[string](http://www.w3.org/2001/XMLSchema#string) - [normal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0002043) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "normal meiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah"^^[string](http://www.w3.org/2001/XMLSchema#string) - [normal premeiotic DNA replication](http://purl.obolibrary.org/obo/FYPO_0002043) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal premeiotic DNA synthesis"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GO:0006279"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "GOC:mah"^^[string](http://www.w3.org/2001/XMLSchema#string)
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition WARN multiple_equivalent_classes polyphosphate absent from cell owl:equivalentClass blank node INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```