Click to expand
# Ontology comparison
## Left
- Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl`
- Version IRI: *None*
- Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl`
## Right
- Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl`
- Version IRI: *None*
- Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl`
### Ontology imports
### Ontology annotations
### DEPRECATED growth auxotrophic for vanilic acid `http://purl.obolibrary.org/obo/FYPO_0008093`
#### Added
- [DEPRECATED growth auxotrophic for vanilic acid](http://purl.obolibrary.org/obo/FYPO_0008093) [label](http://www.w3.org/2000/01/rdf-schema#label) "DEPRECATED growth auxotrophic for vanilic acid"@en
- [DEPRECATED growth auxotrophic for vanilic acid](http://purl.obolibrary.org/obo/FYPO_0008093) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Added in error, removed in same session."^^[string](http://www.w3.org/2001/XMLSchema#string)
- [DEPRECATED growth auxotrophic for vanilic acid](http://purl.obolibrary.org/obo/FYPO_0008093) [deprecated](http://www.w3.org/2002/07/owl#deprecated) true
- Class: [DEPRECATED growth auxotrophic for vanilic acid](http://purl.obolibrary.org/obo/FYPO_0008093)
### growth auxotrophic for para-hydroxy benzoic acid `http://purl.obolibrary.org/obo/FYPO_0008092`
#### Added
- [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092) [label](http://www.w3.org/2000/01/rdf-schema#label) "growth auxotrophic for para-hydroxy benzoic acid"@en
- [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092) [date](http://purl.org/dc/elements/1.1/date) "2023-06-07T10:36:30Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime)
- [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Auxotrophy in which a cell is unable to synthesize para-hydroxy benzoic acid and therefore requires para-hydroxy benzoic acid in the medium for vegetative cell growth."
- [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:37156397"^^[string](http://www.w3.org/2001/XMLSchema#string)
- [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092) [creator](http://purl.org/dc/elements/1.1/creator) "vw253"^^[string](http://www.w3.org/2001/XMLSchema#string)
- Class: [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092)
- [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092) SubClassOf [auxotrophy](http://purl.obolibrary.org/obo/FYPO_0000128)
### normal onset of mitotic anaphase B `http://purl.obolibrary.org/obo/FYPO_0008090`
#### Added
- [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) [creator](http://purl.org/dc/elements/1.1/creator) "vw253"^^[string](http://www.w3.org/2001/XMLSchema#string)
- [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which mitotic anaphase begins at the normal (i.e. indistinguishable from wild type) time relative to other cell cycle events."
- [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) [label](http://www.w3.org/2000/01/rdf-schema#label) "normal onset of mitotic anaphase B"@en
- [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) [date](http://purl.org/dc/elements/1.1/date) "2023-06-07T10:29:56Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime)
- Class: [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090)
- [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some
([onset quality](http://purl.obolibrary.org/obo/PATO_0002325) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [mitotic anaphase B](http://purl.obolibrary.org/obo/GO_0000092)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [normal](http://purl.obolibrary.org/obo/PATO_0000461)))
- [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) SubClassOf [normal cellular process](http://purl.obolibrary.org/obo/FYPO_0000627)
# Changes to ontology after reasoner runs
Click to expand
Coming soon
>
# Errors reported
```
Level Rule Name Subject Property Value
WARN duplicate_exact_synonym decreased rate of deactivation of mitotic spindle assembly checkpoint has_exact_synonym delayed inactivation of the mitotic SAC
WARN duplicate_exact_synonym normal deactivation of mitotic spindle assembly checkpoint has_exact_synonym delayed inactivation of the mitotic SAC
WARN missing_definition abnormal reticulophagy definition
WARN missing_definition abnormal nucleophagy definition
WARN missing_definition output_of definition
WARN missing_definition preceded_by definition
WARN missing_definition precedes definition
WARN missing_obsolete_label DEPRECATED growth auxotrophic for vanilic acid rdfs:label DEPRECATED growth auxotrophic for vanilic acid@en
WARN multiple_equivalent_classes polyphosphate absent from cell owl:equivalentClass blank node
INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO missing_superclass phenotype rdfs:subClassOf
```
Changes added to the edit file this PR
Click to expand
# Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### DEPRECATED growth auxotrophic for vanilic acid `http://purl.obolibrary.org/obo/FYPO_0008093` #### Added - [DEPRECATED growth auxotrophic for vanilic acid](http://purl.obolibrary.org/obo/FYPO_0008093) [label](http://www.w3.org/2000/01/rdf-schema#label) "DEPRECATED growth auxotrophic for vanilic acid"@en - [DEPRECATED growth auxotrophic for vanilic acid](http://purl.obolibrary.org/obo/FYPO_0008093) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Added in error, removed in same session."^^[string](http://www.w3.org/2001/XMLSchema#string) - [DEPRECATED growth auxotrophic for vanilic acid](http://purl.obolibrary.org/obo/FYPO_0008093) [deprecated](http://www.w3.org/2002/07/owl#deprecated) true - Class: [DEPRECATED growth auxotrophic for vanilic acid](http://purl.obolibrary.org/obo/FYPO_0008093) ### growth auxotrophic for para-hydroxy benzoic acid `http://purl.obolibrary.org/obo/FYPO_0008092` #### Added - [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092) [label](http://www.w3.org/2000/01/rdf-schema#label) "growth auxotrophic for para-hydroxy benzoic acid"@en - [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092) [date](http://purl.org/dc/elements/1.1/date) "2023-06-07T10:36:30Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "Auxotrophy in which a cell is unable to synthesize para-hydroxy benzoic acid and therefore requires para-hydroxy benzoic acid in the medium for vegetative cell growth." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:37156397"^^[string](http://www.w3.org/2001/XMLSchema#string) - [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092) [creator](http://purl.org/dc/elements/1.1/creator) "vw253"^^[string](http://www.w3.org/2001/XMLSchema#string) - Class: [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092) - [growth auxotrophic for para-hydroxy benzoic acid](http://purl.obolibrary.org/obo/FYPO_0008092) SubClassOf [auxotrophy](http://purl.obolibrary.org/obo/FYPO_0000128) ### normal onset of mitotic anaphase B `http://purl.obolibrary.org/obo/FYPO_0008090` #### Added - [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) [creator](http://purl.org/dc/elements/1.1/creator) "vw253"^^[string](http://www.w3.org/2001/XMLSchema#string) - [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which mitotic anaphase begins at the normal (i.e. indistinguishable from wild type) time relative to other cell cycle events." - [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) [label](http://www.w3.org/2000/01/rdf-schema#label) "normal onset of mitotic anaphase B"@en - [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) [date](http://purl.org/dc/elements/1.1/date) "2023-06-07T10:29:56Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - Class: [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) - [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([onset quality](http://purl.obolibrary.org/obo/PATO_0002325) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [mitotic anaphase B](http://purl.obolibrary.org/obo/GO_0000092)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [normal](http://purl.obolibrary.org/obo/PATO_0000461))) - [normal onset of mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0008090) SubClassOf [normal cellular process](http://purl.obolibrary.org/obo/FYPO_0000627)Click to expand
Coming soon >