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pombase / fypo

Fission Yeast Phenotype Ontology
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‘closes #4341

Closed ValWood closed 1 year ago

github-actions[bot] commented 1 year ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### DEPRECATED growth auxotrophic for vanilic acid `http://purl.obolibrary.org/obo/FYPO_0008093` #### Removed - [DEPRECATED growth auxotrophic for vanilic acid](http://purl.obolibrary.org/obo/FYPO_0008093) [label](http://www.w3.org/2000/01/rdf-schema#label) "DEPRECATED growth auxotrophic for vanilic acid"@en ### abnormal nucleophagy `http://purl.obolibrary.org/obo/FYPO_0008085` #### Added - [abnormal nucleophagy](http://purl.obolibrary.org/obo/FYPO_0008085) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which autophagic degradation of the nucleus is abolished." - [definition](http://purl.obolibrary.org/obo/IAO_0000115) "PMID:37191320" ### abnormal reticulophagy `http://purl.obolibrary.org/obo/FYPO_0008083` #### Added - [abnormal reticulophagy](http://purl.obolibrary.org/obo/FYPO_0008083) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which autophagic degradation of the endoplasmic reticulum is abnormal." ### normal deactivation of mitotic spindle assembly checkpoint `http://purl.obolibrary.org/obo/FYPO_0005728` #### Removed - [normal deactivation of mitotic spindle assembly checkpoint](http://purl.obolibrary.org/obo/FYPO_0005728) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "delayed inactivation of the spindle assembly checkpoint" - [normal deactivation of mitotic spindle assembly checkpoint](http://purl.obolibrary.org/obo/FYPO_0005728) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "delayed inactivation of the SAC" - [normal deactivation of mitotic spindle assembly checkpoint](http://purl.obolibrary.org/obo/FYPO_0005728) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "delayed inactivation of the mitotic SAC" ### polyphosphate absent from cell `http://purl.obolibrary.org/obo/FYPO_0007820` #### Removed - [polyphosphate absent from cell](http://purl.obolibrary.org/obo/FYPO_0007820) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([decreased concentration](http://purl.obolibrary.org/obo/PATO_0001163) and ([characteristic of](http://purl.obolibrary.org/obo/RO_0000052) some [fungal cell](http://purl.obolibrary.org/obo/CL_0000521)) and ([towards](http://purl.obolibrary.org/obo/RO_0002503) some [polyphosphate](http://purl.obolibrary.org/obo/CHEBI_16838)))
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```