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pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
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‘closes #4351

Closed ValWood closed 1 year ago

github-actions[bot] commented 1 year ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### abolished homologous chromosome movement at anaphase A `http://purl.obolibrary.org/obo/FYPO_0008099` #### Added - [abolished homologous chromosome movement at anaphase A](http://purl.obolibrary.org/obo/FYPO_0008099) [date](http://purl.org/dc/elements/1.1/date) "2023-06-16T12:29:59Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [abolished homologous chromosome movement at anaphase A](http://purl.obolibrary.org/obo/FYPO_0008099) [label](http://www.w3.org/2000/01/rdf-schema#label) "abolished homologous chromosome movement at anaphase A"@en - [abolished homologous chromosome movement at anaphase A](http://purl.obolibrary.org/obo/FYPO_0008099) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which the homologous chromosomes do not migrate toward the spindle pole in spindle elongation phase I (anaphase A)." - [abolished homologous chromosome movement at anaphase A](http://purl.obolibrary.org/obo/FYPO_0008099) [creator](http://purl.org/dc/elements/1.1/creator) "vw253"^^[string](http://www.w3.org/2001/XMLSchema#string) - Class: [abolished homologous chromosome movement at anaphase A](http://purl.obolibrary.org/obo/FYPO_0008099) - [abolished homologous chromosome movement at anaphase A](http://purl.obolibrary.org/obo/FYPO_0008099) SubClassOf [abnormal homologous chromosome segregation](http://purl.obolibrary.org/obo/FYPO_0004159) ### decreased chromosome oscillation at meiotic metaphase I `http://purl.obolibrary.org/obo/FYPO_0008098` #### Added - [decreased chromosome oscillation at meiotic metaphase I](http://purl.obolibrary.org/obo/FYPO_0008098) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased chromosome oscillation at meiotic metaphase I"@en - [decreased chromosome oscillation at meiotic metaphase I](http://purl.obolibrary.org/obo/FYPO_0008098) [creator](http://purl.org/dc/elements/1.1/creator) "vw253"^^[string](http://www.w3.org/2001/XMLSchema#string) - [decreased chromosome oscillation at meiotic metaphase I](http://purl.obolibrary.org/obo/FYPO_0008098) [date](http://purl.org/dc/elements/1.1/date) "2023-06-16T12:25:49Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [decreased chromosome oscillation at meiotic metaphase I](http://purl.obolibrary.org/obo/FYPO_0008098) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which the oscillations of homologous chromosomes which occurs at meiotic metaphase I is reduced." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:33529549"^^[string](http://www.w3.org/2001/XMLSchema#string) - Class: [decreased chromosome oscillation at meiotic metaphase I](http://purl.obolibrary.org/obo/FYPO_0008098) - [decreased chromosome oscillation at meiotic metaphase I](http://purl.obolibrary.org/obo/FYPO_0008098) SubClassOf [abnormal homologous chromosome segregation](http://purl.obolibrary.org/obo/FYPO_0004159) ### elongated cell `http://purl.obolibrary.org/obo/FYPO_0000017` #### Removed - [elongated cell](http://purl.obolibrary.org/obo/FYPO_0000017) SubClassOf [abnormal cell size](http://purl.obolibrary.org/obo/FYPO_0001127) #### Added - [elongated cell](http://purl.obolibrary.org/obo/FYPO_0000017) SubClassOf [increased cell size](http://purl.obolibrary.org/obo/FYPO_0008096) ### increased cell size `http://purl.obolibrary.org/obo/FYPO_0008096` #### Added - [increased cell size](http://purl.obolibrary.org/obo/FYPO_0008096) [date](http://purl.org/dc/elements/1.1/date) "2023-06-16T11:59:56Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased cell size](http://purl.obolibrary.org/obo/FYPO_0008096) [creator](http://purl.org/dc/elements/1.1/creator) "vw253"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased cell size](http://purl.obolibrary.org/obo/FYPO_0008096) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased cell size"@en - [increased cell size](http://purl.obolibrary.org/obo/FYPO_0008096) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell size phenotype in which a cell has a volume that is larger than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:26566110"^^[string](http://www.w3.org/2001/XMLSchema#string) - Class: [increased cell size](http://purl.obolibrary.org/obo/FYPO_0008096) - [increased cell size](http://purl.obolibrary.org/obo/FYPO_0008096) SubClassOf [abnormal cell size](http://purl.obolibrary.org/obo/FYPO_0001127) ### increased cell size during quiescence `http://purl.obolibrary.org/obo/FYPO_0008095` #### Added - [increased cell size during quiescence](http://purl.obolibrary.org/obo/FYPO_0008095) [date](http://purl.org/dc/elements/1.1/date) "2023-06-16T11:57:07Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased cell size during quiescence](http://purl.obolibrary.org/obo/FYPO_0008095) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell size phenotype in which a cell has a volume that is larger than normal during quiescence." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:37128864"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased cell size during quiescence](http://purl.obolibrary.org/obo/FYPO_0008095) [creator](http://purl.org/dc/elements/1.1/creator) "vw253"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased cell size during quiescence](http://purl.obolibrary.org/obo/FYPO_0008095) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased cell size during quiescence"@en - Class: [increased cell size during quiescence](http://purl.obolibrary.org/obo/FYPO_0008095) - [increased cell size during quiescence](http://purl.obolibrary.org/obo/FYPO_0008095) SubClassOf [increased cell size](http://purl.obolibrary.org/obo/FYPO_0008096) ### increased number of Rpa2 foci during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0008094` #### Added - [increased number of Rpa2 foci during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008094) [date](http://purl.org/dc/elements/1.1/date) "2023-06-16T11:52:25Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased number of Rpa2 foci during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008094) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased number of Rpa2 foci during vegetative growth"@en - [increased number of Rpa2 foci during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008094) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which the number of sites at which the protein Rpa2 accumulates is greater than normal during vegetative growth." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:37237082"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased number of Rpa2 foci during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008094) [creator](http://purl.org/dc/elements/1.1/creator) "vw253"^^[string](http://www.w3.org/2001/XMLSchema#string) - Class: [increased number of Rpa2 foci during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008094) - [increased number of Rpa2 foci during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008094) SubClassOf [abnormal cellular physical quality phenotype](http://purl.obolibrary.org/obo/FYPO_0004638) ### separation of sister chromatids in stationary phase `http://purl.obolibrary.org/obo/FYPO_0008097` #### Added - [separation of sister chromatids in stationary phase](http://purl.obolibrary.org/obo/FYPO_0008097) [label](http://www.w3.org/2000/01/rdf-schema#label) "separation of sister chromatids in stationary phase"@en - [separation of sister chromatids in stationary phase](http://purl.obolibrary.org/obo/FYPO_0008097) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which sister chromatids partially separate in G2 arrest after glucose starvation (i.e. stationary phase)." - [separation of sister chromatids in stationary phase](http://purl.obolibrary.org/obo/FYPO_0008097) [creator](http://purl.org/dc/elements/1.1/creator) "vw253"^^[string](http://www.w3.org/2001/XMLSchema#string) - [separation of sister chromatids in stationary phase](http://purl.obolibrary.org/obo/FYPO_0008097) [date](http://purl.org/dc/elements/1.1/date) "2023-06-16T12:06:18Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - Class: [separation of sister chromatids in stationary phase](http://purl.obolibrary.org/obo/FYPO_0008097) - [separation of sister chromatids in stationary phase](http://purl.obolibrary.org/obo/FYPO_0008097) SubClassOf [abnormal chromosome organization](http://purl.obolibrary.org/obo/FYPO_0000641) ### swollen cell `http://purl.obolibrary.org/obo/FYPO_0000025` #### Removed - [swollen cell](http://purl.obolibrary.org/obo/FYPO_0000025) SubClassOf [abnormal cell size](http://purl.obolibrary.org/obo/FYPO_0001127) #### Added - [swollen cell](http://purl.obolibrary.org/obo/FYPO_0000025) SubClassOf [increased cell size](http://purl.obolibrary.org/obo/FYPO_0008096)
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```