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pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
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‘closes 4369' #4370

Closed ValWood closed 1 year ago

github-actions[bot] commented 1 year ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### abnormal hyphal growth `http://purl.obolibrary.org/obo/FYPO_0007773` #### Removed - [abnormal hyphal growth](http://purl.obolibrary.org/obo/FYPO_0007773) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([quality](http://purl.obolibrary.org/obo/PATO_0000001) and ([characteristic of part of](http://purl.obolibrary.org/obo/RO_0002314) some [hyphal growth](http://purl.obolibrary.org/obo/GO_0030448)) and ([has modifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) - [abnormal hyphal growth](http://purl.obolibrary.org/obo/FYPO_0007773) SubClassOf [abnormal biological process](http://purl.obolibrary.org/obo/FYPO_0005447) #### Added - [abnormal hyphal growth](http://purl.obolibrary.org/obo/FYPO_0007773) SubClassOf [cell phenotype](http://purl.obolibrary.org/obo/FYPO_0000002) ### creation_dat `http://www.geneontology.org/formats/oboInOwl#creation_dat` #### Added - AnnotationProperty: [creation_dat](http://www.geneontology.org/formats/oboInOwl#creation_dat) ### decreased protein localization to nucleus during stationary phase `http://purl.obolibrary.org/obo/FYPO_0008107` #### Added - [decreased protein localization to nucleus during stationary phase](http://purl.obolibrary.org/obo/FYPO_0008107) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which the localization of a protein to the nucleus is decreased during stationary phase." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:37128864"^^[string](http://www.w3.org/2001/XMLSchema#string) - [decreased protein localization to nucleus during stationary phase](http://purl.obolibrary.org/obo/FYPO_0008107) [creation_dat](http://www.geneontology.org/formats/oboInOwl#creation_dat) "2023-06-26T10:15:32Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [decreased protein localization to nucleus during stationary phase](http://purl.obolibrary.org/obo/FYPO_0008107) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased protein localization to nucleus during stationary phase"@en - [decreased protein localization to nucleus during stationary phase](http://purl.obolibrary.org/obo/FYPO_0008107) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw"^^[string](http://www.w3.org/2001/XMLSchema#string) - Class: [decreased protein localization to nucleus during stationary phase](http://purl.obolibrary.org/obo/FYPO_0008107) - [decreased protein localization to nucleus during stationary phase](http://purl.obolibrary.org/obo/FYPO_0008107) SubClassOf [decreased protein localization to nucleus](http://purl.obolibrary.org/obo/FYPO_0004455)
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```