pombase / fypo

Fission Yeast Phenotype Ontology
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terms added #4381

Closed manulera closed 1 year ago

github-actions[bot] commented 1 year ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### increased actomyosin contractile ring recoil distance after ring ablation `http://purl.obolibrary.org/obo/FYPO_0009103` #### Added - [increased actomyosin contractile ring recoil distance after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009103) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased actomyosin contractile ring recoil distance after ring ablation"@en - [increased actomyosin contractile ring recoil distance after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009103) [date](http://purl.org/dc/elements/1.1/date) "2023-06-29T10:36:53Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased actomyosin contractile ring recoil distance after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009103) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which the recoil distance of the cytokynetic ring after ring ablation is increased with respect to wild type. Experimentally, a localised cut or ablation is typically achieved using a laser. This distance, in combination with the timing of recoil are used to compute effective stiffness and drag of the ring components. See PMID:36980258." - [increased actomyosin contractile ring recoil distance after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009103) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36980258" - [increased actomyosin contractile ring recoil distance after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009103) [creator](http://purl.org/dc/elements/1.1/creator) "PomBase:mlr"^^[string](http://www.w3.org/2001/XMLSchema#string) - [increased actomyosin contractile ring recoil distance after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009103) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "increased cytokinetic ring recoil distance after laser ablation" - Class: [increased actomyosin contractile ring recoil distance after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009103) - [increased actomyosin contractile ring recoil distance after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009103) SubClassOf [abnormal actomyosin contractile ring](http://purl.obolibrary.org/obo/FYPO_0004736) ### increased actomyosin contractile ring recoil time after ring ablation `http://purl.obolibrary.org/obo/FYPO_0009104` #### Added - [increased actomyosin contractile ring recoil time after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009104) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased actomyosin contractile ring recoil time after ring ablation"@en - [increased actomyosin contractile ring recoil time after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009104) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which the recoil time of the cytokynetic ring after ring ablation is increased with respect to wild type. Experimentally, a localised cut or ablation is typically achieved using a laser. The recoil time is the time it takes the recoil to stop after laser ablation. This timing, in combination with the recoil distance are used to compute effective stiffness and drag of the ring components. See PMID:36980258." - [increased actomyosin contractile ring recoil time after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009104) [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36980258" - [increased actomyosin contractile ring recoil time after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009104) [date](http://purl.org/dc/elements/1.1/date) "2023-06-29T10:38:29Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased actomyosin contractile ring recoil time after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009104) [has_broad_synonym](http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym) "increased cytokinetic ring recoil distance after laser ablation" - [increased actomyosin contractile ring recoil time after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009104) [creator](http://purl.org/dc/elements/1.1/creator) "PomBase:mlr"^^[string](http://www.w3.org/2001/XMLSchema#string) - Class: [increased actomyosin contractile ring recoil time after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009104) - [increased actomyosin contractile ring recoil time after ring ablation](http://purl.obolibrary.org/obo/FYPO_0009104) SubClassOf [abnormal actomyosin contractile ring](http://purl.obolibrary.org/obo/FYPO_0004736) ### interphase microtubules present in decreased numbers `http://purl.obolibrary.org/obo/FYPO_0009102` #### Added - [interphase microtubules present in decreased numbers](http://purl.obolibrary.org/obo/FYPO_0009102) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "fewer microtubules present during mitotic interphase" - [interphase microtubules present in decreased numbers](http://purl.obolibrary.org/obo/FYPO_0009102) [creator](http://purl.org/dc/elements/1.1/creator) "PomBase:mlr"^^[string](http://www.w3.org/2001/XMLSchema#string) - [interphase microtubules present in decreased numbers](http://purl.obolibrary.org/obo/FYPO_0009102) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "decreased number of interphase microtubules" - [interphase microtubules present in decreased numbers](http://purl.obolibrary.org/obo/FYPO_0009102) [label](http://www.w3.org/2000/01/rdf-schema#label) "interphase microtubules present in decreased numbers"@en - [interphase microtubules present in decreased numbers](http://purl.obolibrary.org/obo/FYPO_0009102) [date](http://purl.org/dc/elements/1.1/date) "2023-06-29T10:32:36Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [interphase microtubules present in decreased numbers](http://purl.obolibrary.org/obo/FYPO_0009102) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain less cytoplasmic microtubules than normal during interphase of the mitotic cell cycle." - Class: [interphase microtubules present in decreased numbers](http://purl.obolibrary.org/obo/FYPO_0009102) - [interphase microtubules present in decreased numbers](http://purl.obolibrary.org/obo/FYPO_0009102) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([has fewer parts of type](http://purl.obolibrary.org/obo/PATO_0002001) and ([exists_during](http://purl.obolibrary.org/obo/GOREL_0000032) some [mitotic interphase](http://purl.obolibrary.org/obo/GO_0051329)) and ([exists_during](http://purl.obolibrary.org/obo/GOREL_0000032) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690)) and ([towards](http://purl.obolibrary.org/obo/RO_0002503) some [cytoplasmic microtubule](http://purl.obolibrary.org/obo/GO_0005881))) - [interphase microtubules present in decreased numbers](http://purl.obolibrary.org/obo/FYPO_0009102) SubClassOf [microtubules present in decreased numbers](http://purl.obolibrary.org/obo/FYPO_0003430)
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```