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pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
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Protege 56 #4385

Closed manulera closed 1 year ago

github-actions[bot] commented 1 year ago

Hi @manulera! It seems you forgot to run normalised_xsd_string on your PR. Please run it and commit the changes.

github-actions[bot] commented 1 year ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### abnormal distribution of interpolar microtubule rescue during anaphase B `http://purl.obolibrary.org/obo/FYPO_0007975` #### Removed - [abnormal distribution of interpolar microtubule rescue during anaphase B](http://purl.obolibrary.org/obo/FYPO_0007975) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed during anaphase B in which the distribution of the positions of interpolar microtubule rescues is abnormal. The positions of interpolar microtubule rescues are where the transitions from shrinkage to growth occur."^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864"^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" #### Added - [abnormal distribution of interpolar microtubule rescue during anaphase B](http://purl.obolibrary.org/obo/FYPO_0007975) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed during anaphase B in which the distribution of the positions of interpolar microtubule rescues is abnormal. The positions of interpolar microtubule rescues are where the transitions from shrinkage to growth occur." - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864" - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" ### cut with mitotic spindle microtubules protruding beyond spindle pole body `http://purl.obolibrary.org/obo/FYPO_0007968` #### Removed - [cut with mitotic spindle microtubules protruding beyond spindle pole body](http://purl.obolibrary.org/obo/FYPO_0007968) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An inviable phenotype observed in the vegetative growth phase of the life cycle after normal chromosome separation in which pushing forces exerted by microtubules protruding from the spindle pole bodies displace one of the daughter nuclei to the site of cytokinesis. The septum then physically divides that nucleus into two parts, giving rise to inviable daughter cell."^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:26031557"^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:vw"^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" #### Added - [cut with mitotic spindle microtubules protruding beyond spindle pole body](http://purl.obolibrary.org/obo/FYPO_0007968) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An inviable phenotype observed in the vegetative growth phase of the life cycle after normal chromosome separation in which pushing forces exerted by microtubules protruding from the spindle pole bodies displace one of the daughter nuclei to the site of cytokinesis. The septum then physically divides that nucleus into two parts, giving rise to inviable daughter cell." - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:26031557" - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:vw" - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" ### decreased rate of interpolar microtubule polymerization during mitotic anaphase B `http://purl.obolibrary.org/obo/FYPO_0007972` #### Removed - [decreased rate of interpolar microtubule polymerization during mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0007972) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a lower rate, or speed, than normal."^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864"^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" #### Added - [decreased rate of interpolar microtubule polymerization during mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0007972) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a lower rate, or speed, than normal." - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864" - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" ### increased duration of interpolar microtubule growth events during anaphase B `http://purl.obolibrary.org/obo/FYPO_0007976` #### Removed - [increased duration of interpolar microtubule growth events during anaphase B](http://purl.obolibrary.org/obo/FYPO_0007976) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A microtubule cytoskeleton organization phenotype observed during anaphase B in which the duration of interpolar microtubule growth events is longer."^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864"^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" #### Added - [increased duration of interpolar microtubule growth events during anaphase B](http://purl.obolibrary.org/obo/FYPO_0007976) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A microtubule cytoskeleton organization phenotype observed during anaphase B in which the duration of interpolar microtubule growth events is longer." - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864" - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" ### increased interphase nuclear movement velocity in daughter cell without mitochondria `http://purl.obolibrary.org/obo/FYPO_0009005` #### Removed - [increased interphase nuclear movement velocity in daughter cell without mitochondria](http://purl.obolibrary.org/obo/FYPO_0009005) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in mitotic interphase in which microtubule-based movement oscillationsoccur at a faster speed than normal in a daughter cell that inherits no mitochondria." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36633091"^^[string](http://www.w3.org/2001/XMLSchema#string) - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mlr"^^[string](http://www.w3.org/2001/XMLSchema#string) #### Added - [increased interphase nuclear movement velocity in daughter cell without mitochondria](http://purl.obolibrary.org/obo/FYPO_0009005) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in mitotic interphase in which microtubule-based movement oscillations occur at a faster speed than normal in a daughter cell that inherits no mitochondria." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36633091" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mlr" ### increased rate of interpolar microtubule polymerization during mitotic anaphase B `http://purl.obolibrary.org/obo/FYPO_0007971` #### Removed - [increased rate of interpolar microtubule polymerization during mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0007971) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a higher rate, or speed, than normal."^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864"^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" #### Added - [increased rate of interpolar microtubule polymerization during mitotic anaphase B](http://purl.obolibrary.org/obo/FYPO_0007971) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a higher rate, or speed, than normal." - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864" - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" ### increased rate of interpolar microtubule polymerization inside the mitotic nuclear membrane bridge `http://purl.obolibrary.org/obo/FYPO_0007974` #### Removed - [increased rate of interpolar microtubule polymerization inside the mitotic nuclear membrane bridge](http://purl.obolibrary.org/obo/FYPO_0007974) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization occurs at a higher rate, or speed, than normal for microtubules with their plus ends inside the nuclear membrane bridge formed during mitotic anaphase B."^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864"^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" #### Added - [increased rate of interpolar microtubule polymerization inside the mitotic nuclear membrane bridge](http://purl.obolibrary.org/obo/FYPO_0007974) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization occurs at a higher rate, or speed, than normal for microtubules with their plus ends inside the nuclear membrane bridge formed during mitotic anaphase B." - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864" - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" ### increased rate of microtuble polymerization during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0007970` #### Removed - [increased rate of microtuble polymerization during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0007970) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a higher rate, or speed, than normal."^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864"^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" #### Added - [increased rate of microtuble polymerization during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0007970) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a higher rate, or speed, than normal." - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35293864" - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" ### increased sensitivity to chemical in stationary phase `http://purl.obolibrary.org/obo/FYPO_0008000` #### Removed - [increased sensitivity to chemical in stationary phase](http://purl.obolibrary.org/obo/FYPO_0008000) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A phenotype in which cells show increased sensitivity to a chemical when the cell population is in stationary phase. Cells stop growing (and may die) at a concentration of that chemical that allows wild type cells to grow."^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35618649"^^[string](http://www.w3.org/2001/XMLSchema#string) - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr" #### Added - [increased sensitivity to chemical in stationary phase](http://purl.obolibrary.org/obo/FYPO_0008000) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A phenotype in which cells show increased sensitivity to a chemical when the cell population is in stationary phase. Cells stop growing (and may die) at a concentration of that chemical that allows wild type cells to grow." - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:35618649" - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:mlr"
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```