search

pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
14 stars 6 forks source link

Changes 2807 #4398

Closed manulera closed 11 months ago

github-actions[bot] commented 11 months ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### abolished flocculation during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0009112` #### Added - [abolished flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009112) [creator](http://purl.org/dc/elements/1.1/creator) "PomBase:mlr" - [abolished flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009112) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell adhesion phenotype observed in the vegetative growth phase of the life cycle in which flocculation does not occur in conditions where wild-type cells floculate. Flocculation is the non-sexual aggregation of cells." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:35924983" - [abolished flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009112) [date](http://purl.org/dc/elements/1.1/date) "2023-07-28T07:46:49Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [abolished flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009112) [label](http://www.w3.org/2000/01/rdf-schema#label) "abolished flocculation during vegetative growth"@en - Class: [abolished flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009112) - [abolished flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009112) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([lacking processual parts](http://purl.obolibrary.org/obo/PATO_0001558) and ([during](http://purl.obolibrary.org/obo/GOREL_0000002) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690)) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [flocculation](http://purl.obolibrary.org/obo/GO_0000128)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) - [abolished flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009112) SubClassOf [abnormal cell adhesion during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000009) ### abolished protein localization to mitotic spindle polar microtubules during anaphase B `http://purl.obolibrary.org/obo/FYPO_0009113` #### Added - [abolished protein localization to mitotic spindle polar microtubules during anaphase B](http://purl.obolibrary.org/obo/FYPO_0009113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abolished protein localization to interpolar microtubules during mitotic anaphase B" - [abolished protein localization to mitotic spindle polar microtubules during anaphase B](http://purl.obolibrary.org/obo/FYPO_0009113) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle polar microtubules during anaphase B does not occur." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:34080538" - [abolished protein localization to mitotic spindle polar microtubules during anaphase B](http://purl.obolibrary.org/obo/FYPO_0009113) [date](http://purl.org/dc/elements/1.1/date) "2023-07-28T08:09:39Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [abolished protein localization to mitotic spindle polar microtubules during anaphase B](http://purl.obolibrary.org/obo/FYPO_0009113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abolished protein localisation to mitotic spindle polar microtubules during anaphase B" - [abolished protein localization to mitotic spindle polar microtubules during anaphase B](http://purl.obolibrary.org/obo/FYPO_0009113) [creator](http://purl.org/dc/elements/1.1/creator) "PomBase:mlr" - [abolished protein localization to mitotic spindle polar microtubules during anaphase B](http://purl.obolibrary.org/obo/FYPO_0009113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abolished protein localisation to interpolar microtubules during mitotic anaphase B" - [abolished protein localization to mitotic spindle polar microtubules during anaphase B](http://purl.obolibrary.org/obo/FYPO_0009113) [label](http://www.w3.org/2000/01/rdf-schema#label) "abolished protein localization to mitotic spindle polar microtubules during anaphase B"@en - Class: [abolished protein localization to mitotic spindle polar microtubules during anaphase B](http://purl.obolibrary.org/obo/FYPO_0009113) - [abolished protein localization to mitotic spindle polar microtubules during anaphase B](http://purl.obolibrary.org/obo/FYPO_0009113) SubClassOf [abolished protein localization to mitotic spindle during mitosis](http://purl.obolibrary.org/obo/FYPO_0004754) ### increased flocculation during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0009111` #### Added - [increased flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009111) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased flocculation during vegetative growth"@en - [increased flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009111) [creator](http://purl.org/dc/elements/1.1/creator) "PomBase:mlr" - [increased flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009111) [date](http://purl.org/dc/elements/1.1/date) "2023-07-28T07:40:58Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009111) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A vegetative cell population phenotype that reflects increased occurrence of flocculation. Flocculation is the non-sexual aggregation of single cells." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:35924983" - Class: [increased flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009111) - [increased flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009111) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([increased occurrence](http://purl.obolibrary.org/obo/PATO_0002051) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [flocculation](http://purl.obolibrary.org/obo/GO_0000128)) and ([inheres in part of](http://purl.obolibrary.org/obo/RO_0002314) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690))) - [increased flocculation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0009111) SubClassOf [increased flocculation](http://purl.obolibrary.org/obo/FYPO_0000155) ### transient monopolar mitotic spindle `http://purl.obolibrary.org/obo/FYPO_0009114` #### Added - [transient monopolar mitotic spindle](http://purl.obolibrary.org/obo/FYPO_0009114) [creator](http://purl.org/dc/elements/1.1/creator) "PomBase:mlr" - [transient monopolar mitotic spindle](http://purl.obolibrary.org/obo/FYPO_0009114) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A physical cellular phenotype in which the mitotic spindle remains monopolar when formed, with microtubules emanating from only one pole, for longer than wild-type, but eventually reaches bipolarity." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25057016" - [transient monopolar mitotic spindle](http://purl.obolibrary.org/obo/FYPO_0009114) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "temporary monopolar mitotic spindle" - [transient monopolar mitotic spindle](http://purl.obolibrary.org/obo/FYPO_0009114) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "monopolar mitotic spindle that eventually reaches bipolarity" - [transient monopolar mitotic spindle](http://purl.obolibrary.org/obo/FYPO_0009114) [date](http://purl.org/dc/elements/1.1/date) "2023-07-28T08:20:20Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [transient monopolar mitotic spindle](http://purl.obolibrary.org/obo/FYPO_0009114) [label](http://www.w3.org/2000/01/rdf-schema#label) "transient monopolar mitotic spindle"@en - Class: [transient monopolar mitotic spindle](http://purl.obolibrary.org/obo/FYPO_0009114) - [transient monopolar mitotic spindle](http://purl.obolibrary.org/obo/FYPO_0009114) SubClassOf [monopolar mitotic spindle](http://purl.obolibrary.org/obo/FYPO_0000276)
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```