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pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
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‘closes #4405’ #4412

Closed ValWood closed 10 months ago

github-actions[bot] commented 10 months ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### branched mitochondria `http://purl.obolibrary.org/obo/FYPO_0003807` #### Removed - [branched mitochondria](http://purl.obolibrary.org/obo/FYPO_0003807) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "branched mitochondria during mitotic cell cycle" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [branched mitochondria](http://purl.obolibrary.org/obo/FYPO_0003807) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which mitochondria form branched structures." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:19373772" - [branched mitochondria](http://purl.obolibrary.org/obo/FYPO_0003807) [label](http://www.w3.org/2000/01/rdf-schema#label) "branched mitochondria" #### Added - [branched mitochondria](http://purl.obolibrary.org/obo/FYPO_0003807) [label](http://www.w3.org/2000/01/rdf-schema#label) "net-like mitochondrial morphology" - [branched mitochondria](http://purl.obolibrary.org/obo/FYPO_0003807) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which mitochondria form branched structures." - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PMID:37540145" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:19373772" - [branched mitochondria](http://purl.obolibrary.org/obo/FYPO_0003807) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "branched mitochondria" ### constricted chained mitochondrion `http://purl.obolibrary.org/obo/FYPO_0008067` #### Removed - [constricted chained mitochondrion](http://purl.obolibrary.org/obo/FYPO_0008067) SubClassOf [abnormal mitochondrial morphology](http://purl.obolibrary.org/obo/FYPO_0000359) #### Added - [constricted chained mitochondrion](http://purl.obolibrary.org/obo/FYPO_0008067) SubClassOf [mitochondria fused](http://purl.obolibrary.org/obo/FYPO_0000056) ### mitochondria fused `http://purl.obolibrary.org/obo/FYPO_0000056` #### Removed - [mitochondria fused](http://purl.obolibrary.org/obo/FYPO_0000056) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which mitochondria have fused into fewer and larger structures than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" #### Added - [mitochondria fused](http://purl.obolibrary.org/obo/FYPO_0000056) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which mitochondria have fused into fewer and larger structures than normal, or failed to undergo fission." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:vw"
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf INFO missing_superclass normal inositol heptakisphosphate 5-kinase activity rdfs:subClassOf ```