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# Ontology comparison
## Left
- Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl`
- Version IRI: *None*
- Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl`
## Right
- Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl`
- Version IRI: *None*
- Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl`
### Ontology imports
### Ontology annotations
### decreased splicing of introns with branch point-distant 3’-splice site `http://purl.obolibrary.org/obo/FYPO_0008118`
#### Added
- [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw"
- [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased splicing of introns with branch point-distant 3’-splice site"@en
- [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA splicing via the spliceosome is decreased for specific introns with longer than average (>21 bp) branch site to acceptor distance."
- [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36095128"
- [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) [creation_dat](http://www.geneontology.org/formats/oboInOwl#creation_dat) "2023-08-31T18:23:05Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime)
- [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Inefficient excision of introns with branch point (BP)-distant 3’-splice site (ss)"
- Class: [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118)
- [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) SubClassOf [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244)
### decreased splicing of mRNA introns with low A/U content `http://purl.obolibrary.org/obo/FYPO_0003242`
#### Added
- [decreased splicing of mRNA introns with low A/U content](http://purl.obolibrary.org/obo/FYPO_0003242) SubClassOf [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244)
### decreased splicing of mRNA introns with nonconsensus cis-splicing sequences `http://purl.obolibrary.org/obo/FYPO_0007199`
#### Added
- [decreased splicing of mRNA introns with nonconsensus cis-splicing sequences](http://purl.obolibrary.org/obo/FYPO_0007199) SubClassOf [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244)
### increased tRNA level during cellular response to phosphate starvation `http://purl.obolibrary.org/obo/FYPO_0008102`
#### Added
- [increased tRNA level during cellular response to phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008102) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "increased tRNA production during cellular response to phosphate starvation"
### intron-specific abnormal mRNA splicing, via spliceosome `http://purl.obolibrary.org/obo/FYPO_0003244`
#### Removed
- [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA splicing via the spliceosome takes place normally for some, but abnormally for other, specific introns."
- [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah"
- [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23754748"
- [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244) [label](http://www.w3.org/2000/01/rdf-schema#label) "intron-specific abnormal mRNA splicing, via spliceosome"
#### Added
- [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA splicing via the spliceosome takes place normally for some, but is decreased for other, specific introns."
- [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23754748"
- [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased mRNA splicing, via spliceosome, intron-specific"
### normal inositol heptakisphosphate 5-kinase activity `http://purl.obolibrary.org/obo/FYPO_0008079`
#### Added
- [normal inositol heptakisphosphate 5-kinase activity](http://purl.obolibrary.org/obo/FYPO_0008079) SubClassOf [normal catalytic activity](http://purl.obolibrary.org/obo/FYPO_0000660)
### normal morphology during phosphate starvation `http://purl.obolibrary.org/obo/FYPO_0008119`
#### Added
- [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119) [label](http://www.w3.org/2000/01/rdf-schema#label) "normal morphology during phosphate starvation"@en
- [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw"
- [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119) [creation_dat](http://www.geneontology.org/formats/oboInOwl#creation_dat) "2023-08-31T18:35:50Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime)
- [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype characterized by normal cell morphology (i.e. size, shape, and structure indistinguishable from wild type) when the cell is subject to phophate starvation."
- [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36794724"
- Class: [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119)
- [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119) SubClassOf [normal cell morphology](http://purl.obolibrary.org/obo/FYPO_0000672)
# Changes to ontology after reasoner runs
Click to expand
Coming soon
>
# Errors reported
```
Level Rule Name Subject Property Value
WARN missing_definition output_of definition
WARN missing_definition preceded_by definition
WARN missing_definition precedes definition
INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues.
INFO missing_superclass phenotype rdfs:subClassOf
```
Changes added to the edit file this PR
Click to expand
# Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### decreased splicing of introns with branch point-distant 3’-splice site `http://purl.obolibrary.org/obo/FYPO_0008118` #### Added - [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased splicing of introns with branch point-distant 3’-splice site"@en - [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA splicing via the spliceosome is decreased for specific introns with longer than average (>21 bp) branch site to acceptor distance." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36095128" - [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) [creation_dat](http://www.geneontology.org/formats/oboInOwl#creation_dat) "2023-08-31T18:23:05Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "Inefficient excision of introns with branch point (BP)-distant 3’-splice site (ss)" - Class: [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) - [decreased splicing of introns with branch point-distant 3’-splice site](http://purl.obolibrary.org/obo/FYPO_0008118) SubClassOf [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244) ### decreased splicing of mRNA introns with low A/U content `http://purl.obolibrary.org/obo/FYPO_0003242` #### Added - [decreased splicing of mRNA introns with low A/U content](http://purl.obolibrary.org/obo/FYPO_0003242) SubClassOf [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244) ### decreased splicing of mRNA introns with nonconsensus cis-splicing sequences `http://purl.obolibrary.org/obo/FYPO_0007199` #### Added - [decreased splicing of mRNA introns with nonconsensus cis-splicing sequences](http://purl.obolibrary.org/obo/FYPO_0007199) SubClassOf [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244) ### increased tRNA level during cellular response to phosphate starvation `http://purl.obolibrary.org/obo/FYPO_0008102` #### Added - [increased tRNA level during cellular response to phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008102) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "increased tRNA production during cellular response to phosphate starvation" ### intron-specific abnormal mRNA splicing, via spliceosome `http://purl.obolibrary.org/obo/FYPO_0003244` #### Removed - [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA splicing via the spliceosome takes place normally for some, but abnormally for other, specific introns." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23754748" - [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244) [label](http://www.w3.org/2000/01/rdf-schema#label) "intron-specific abnormal mRNA splicing, via spliceosome" #### Added - [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA splicing via the spliceosome takes place normally for some, but is decreased for other, specific introns." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23754748" - [intron-specific abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003244) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased mRNA splicing, via spliceosome, intron-specific" ### normal inositol heptakisphosphate 5-kinase activity `http://purl.obolibrary.org/obo/FYPO_0008079` #### Added - [normal inositol heptakisphosphate 5-kinase activity](http://purl.obolibrary.org/obo/FYPO_0008079) SubClassOf [normal catalytic activity](http://purl.obolibrary.org/obo/FYPO_0000660) ### normal morphology during phosphate starvation `http://purl.obolibrary.org/obo/FYPO_0008119` #### Added - [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119) [label](http://www.w3.org/2000/01/rdf-schema#label) "normal morphology during phosphate starvation"@en - [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119) [creation_dat](http://www.geneontology.org/formats/oboInOwl#creation_dat) "2023-08-31T18:35:50Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype characterized by normal cell morphology (i.e. size, shape, and structure indistinguishable from wild type) when the cell is subject to phophate starvation." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:36794724" - Class: [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119) - [normal morphology during phosphate starvation](http://purl.obolibrary.org/obo/FYPO_0008119) SubClassOf [normal cell morphology](http://purl.obolibrary.org/obo/FYPO_0000672)Click to expand
Coming soon >