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pombase / fypo

Fission Yeast Phenotype Ontology
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closes #4454; closes #4449; part of others #4455

Closed ValWood closed 6 months ago

github-actions[bot] commented 6 months ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### abnormal nuclear envelope morphology during mitosis `http://purl.obolibrary.org/obo/FYPO_0003779` #### Removed - [abnormal nuclear envelope morphology during mitosis](http://purl.obolibrary.org/obo/FYPO_0003779) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abnormal nuclear envelope morphology during mitosis during vegetative growth" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [abnormal nuclear envelope morphology during mitosis](http://purl.obolibrary.org/obo/FYPO_0003779) SubClassOf [abnormal nuclear morphology during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000062) - [abnormal nuclear envelope morphology during mitosis](http://purl.obolibrary.org/obo/FYPO_0003779) SubClassOf [abnormal endomembrane system morphology](http://purl.obolibrary.org/obo/FYPO_0000353) #### Added - [abnormal nuclear envelope morphology during mitosis](http://purl.obolibrary.org/obo/FYPO_0003779) SubClassOf [abnormal nuclear envelope morphology during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000769) ### decreased RNA level during meiosis II `http://purl.obolibrary.org/obo/FYPO_0008141` #### Added - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "decreased RNA level during second meiotic nuclear division" - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "reduced RNA level during meiosis II" - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription. We recommend noting which RNA(s) were used in the assay when annotating to this term." - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "fission_yeast_phenotype" - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-12-29T19:18:34Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased RNA level during meiosis II"@en - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "decreased transcript level during meiosis II" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:vw" - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which the amount of RNA measured in a cell is lower than normal during the second meiotic nuclear division. Total RNA or a specific RNA may be affected." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:16272747" - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "decreased RNA accumulation during meiosis II" - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) [id](http://www.geneontology.org/formats/oboInOwl#id) "FYPO:0004937" - Class: [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([decreased concentration](http://purl.obolibrary.org/obo/PATO_0001163) and ([exists_during](http://purl.obolibrary.org/obo/GOREL_0000032) some [meiosis II](http://purl.obolibrary.org/obo/GO_0007135)) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [fungal cell](http://purl.obolibrary.org/obo/CL_0000521)) and ([towards](http://purl.obolibrary.org/obo/RO_0002503) some [ribonucleic acid](http://purl.obolibrary.org/obo/CHEBI_33697))) - [decreased RNA level during meiosis II](http://purl.obolibrary.org/obo/FYPO_0008141) SubClassOf [decreased RNA level during meiosis](http://purl.obolibrary.org/obo/FYPO_0002959) ### decreased level of heme O in cell `http://purl.obolibrary.org/obo/FYPO_0008145` #### Added - [decreased level of heme O in cell](http://purl.obolibrary.org/obo/FYPO_0008145) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which the amount of heme O measured in a cell is lower than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11248251" - [decreased level of heme O in cell](http://purl.obolibrary.org/obo/FYPO_0008145) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "decreased heme O level" - [decreased level of heme O in cell](http://purl.obolibrary.org/obo/FYPO_0008145) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [decreased level of heme O in cell](http://purl.obolibrary.org/obo/FYPO_0008145) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased level of heme O in cell"@en - [decreased level of heme O in cell](http://purl.obolibrary.org/obo/FYPO_0008145) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-12-29T19:32:33Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [decreased level of heme O in cell](http://purl.obolibrary.org/obo/FYPO_0008145) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "fission_yeast_phenotype" - Class: [decreased level of heme O in cell](http://purl.obolibrary.org/obo/FYPO_0008145) - [decreased level of heme O in cell](http://purl.obolibrary.org/obo/FYPO_0008145) SubClassOf [decreased level of substance in cell](http://purl.obolibrary.org/obo/FYPO_0000991) ### decreased size and number of lipid droplets `http://purl.obolibrary.org/obo/FYPO_0008137` #### Added - [decreased size and number of lipid droplets](http://purl.obolibrary.org/obo/FYPO_0008137) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which lipid droplets are smaller and more numerous than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:35658118" - [decreased size and number of lipid droplets](http://purl.obolibrary.org/obo/FYPO_0008137) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-12-29T18:29:47Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [decreased size and number of lipid droplets](http://purl.obolibrary.org/obo/FYPO_0008137) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [decreased size and number of lipid droplets](http://purl.obolibrary.org/obo/FYPO_0008137) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased size and number of lipid droplets"@en - Class: [decreased size and number of lipid droplets](http://purl.obolibrary.org/obo/FYPO_0008137) - [decreased size and number of lipid droplets](http://purl.obolibrary.org/obo/FYPO_0008137) SubClassOf [abnormal lipid droplet organization](http://purl.obolibrary.org/obo/FYPO_0000808) ### dilated endoplasmic reticulum lumen `http://purl.obolibrary.org/obo/FYPO_0008139` #### Added - [dilated endoplasmic reticulum lumen](http://purl.obolibrary.org/obo/FYPO_0008139) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-12-29T18:58:59Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [dilated endoplasmic reticulum lumen](http://purl.obolibrary.org/obo/FYPO_0008139) [label](http://www.w3.org/2000/01/rdf-schema#label) "dilated endoplasmic reticulum lumen"@en - [dilated endoplasmic reticulum lumen](http://purl.obolibrary.org/obo/FYPO_0008139) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "dialted ER lumen" - [dilated endoplasmic reticulum lumen](http://purl.obolibrary.org/obo/FYPO_0008139) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the endoplasmic reticulum lumen is larger than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11839792" - [dilated endoplasmic reticulum lumen](http://purl.obolibrary.org/obo/FYPO_0008139) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - Class: [dilated endoplasmic reticulum lumen](http://purl.obolibrary.org/obo/FYPO_0008139) - [dilated endoplasmic reticulum lumen](http://purl.obolibrary.org/obo/FYPO_0008139) SubClassOf [abnormal endoplasmic reticulum morphology](http://purl.obolibrary.org/obo/FYPO_0000354) ### dilated nuclear envelope lumen `http://purl.obolibrary.org/obo/FYPO_0008140` #### Added - [dilated nuclear envelope lumen](http://purl.obolibrary.org/obo/FYPO_0008140) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-12-29T19:09:04Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [dilated nuclear envelope lumen](http://purl.obolibrary.org/obo/FYPO_0008140) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "An abnormal nuclear envelope morpbology in the vegetative growth phase of the life cycle in which the nuclear envelope lumen is larger than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11839792" - [dilated nuclear envelope lumen](http://purl.obolibrary.org/obo/FYPO_0008140) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [dilated nuclear envelope lumen](http://purl.obolibrary.org/obo/FYPO_0008140) [label](http://www.w3.org/2000/01/rdf-schema#label) "dilated nuclear envelope lumen"@en - Class: [dilated nuclear envelope lumen](http://purl.obolibrary.org/obo/FYPO_0008140) - [dilated nuclear envelope lumen](http://purl.obolibrary.org/obo/FYPO_0008140) SubClassOf [abnormal nuclear envelope morphology during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000769) ### excess endoplasmic reticulum membrane present `http://purl.obolibrary.org/obo/FYPO_0001784` #### Added - [excess endoplasmic reticulum membrane present](http://purl.obolibrary.org/obo/FYPO_0001784) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "accumulated ER membrane" - [excess endoplasmic reticulum membrane present](http://purl.obolibrary.org/obo/FYPO_0001784) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "accumulated endoplasmic reticulum membrane" ### heme A absent from cell `http://purl.obolibrary.org/obo/FYPO_0008143` #### Added - [heme A absent from cell](http://purl.obolibrary.org/obo/FYPO_0008143) [label](http://www.w3.org/2000/01/rdf-schema#label) "heme A absent from cell"@en - [heme A absent from cell](http://purl.obolibrary.org/obo/FYPO_0008143) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [heme A absent from cell](http://purl.obolibrary.org/obo/FYPO_0008143) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-12-29T19:25:56Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [heme A absent from cell](http://purl.obolibrary.org/obo/FYPO_0008143) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which the amount heme A measured in a cell is too low to detect." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11248251" - Class: [heme A absent from cell](http://purl.obolibrary.org/obo/FYPO_0008143) - [heme A absent from cell](http://purl.obolibrary.org/obo/FYPO_0008143) SubClassOf [heme absent from cell](http://purl.obolibrary.org/obo/FYPO_0008142) ### heme O absent from cell `http://purl.obolibrary.org/obo/FYPO_0008144` #### Added - [heme O absent from cell](http://purl.obolibrary.org/obo/FYPO_0008144) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which the amount heme O measured in a cell is too low to detect." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11248251" - [heme O absent from cell](http://purl.obolibrary.org/obo/FYPO_0008144) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-12-29T19:29:25Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [heme O absent from cell](http://purl.obolibrary.org/obo/FYPO_0008144) [label](http://www.w3.org/2000/01/rdf-schema#label) "heme O absent from cell"@en - [heme O absent from cell](http://purl.obolibrary.org/obo/FYPO_0008144) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - Class: [heme O absent from cell](http://purl.obolibrary.org/obo/FYPO_0008144) - [heme O absent from cell](http://purl.obolibrary.org/obo/FYPO_0008144) SubClassOf [heme absent from cell](http://purl.obolibrary.org/obo/FYPO_0008142) ### heme absent from cell `http://purl.obolibrary.org/obo/FYPO_0008142` #### Added - [heme absent from cell](http://purl.obolibrary.org/obo/FYPO_0008142) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [heme absent from cell](http://purl.obolibrary.org/obo/FYPO_0008142) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-12-29T19:25:56Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [heme absent from cell](http://purl.obolibrary.org/obo/FYPO_0008142) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which the amount heme measured in a cell is too low to detect." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11248251" - [heme absent from cell](http://purl.obolibrary.org/obo/FYPO_0008142) [label](http://www.w3.org/2000/01/rdf-schema#label) "heme absent from cell"@en - Class: [heme absent from cell](http://purl.obolibrary.org/obo/FYPO_0008142) - [heme absent from cell](http://purl.obolibrary.org/obo/FYPO_0008142) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([lacks all parts of type](http://purl.obolibrary.org/obo/PATO_0002000) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [fungal cell](http://purl.obolibrary.org/obo/CL_0000521)) and ([towards](http://purl.obolibrary.org/obo/RO_0002503) some [heme](http://purl.obolibrary.org/obo/CHEBI_30413))) - [heme absent from cell](http://purl.obolibrary.org/obo/FYPO_0008142) SubClassOf [substance absent from cell](http://purl.obolibrary.org/obo/FYPO_0001888) ### increased antisense RNA level `http://purl.obolibrary.org/obo/FYPO_0003557` #### Removed - [increased antisense RNA level](http://purl.obolibrary.org/obo/FYPO_0003557) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased antisense RNA level](http://purl.obolibrary.org/obo/FYPO_0003557) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased centromeric transcript level `http://purl.obolibrary.org/obo/FYPO_0004982` #### Removed - [increased centromeric transcript level](http://purl.obolibrary.org/obo/FYPO_0004982) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased centromeric transcript level](http://purl.obolibrary.org/obo/FYPO_0004982) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased level of mitochondrial tRNA processing intermediates with 3' extensions `http://purl.obolibrary.org/obo/FYPO_0002590` #### Removed - [increased level of mitochondrial tRNA processing intermediates with 3' extensions](http://purl.obolibrary.org/obo/FYPO_0002590) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased level of mitochondrial tRNA processing intermediates with 3' extensions](http://purl.obolibrary.org/obo/FYPO_0002590) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased level of nuclear tRNA processing intermediates with 3' extensions `http://purl.obolibrary.org/obo/FYPO_0002581` #### Removed - [increased level of nuclear tRNA processing intermediates with 3' extensions](http://purl.obolibrary.org/obo/FYPO_0002581) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased level of nuclear tRNA processing intermediates with 3' extensions](http://purl.obolibrary.org/obo/FYPO_0002581) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased lncRNA level `http://purl.obolibrary.org/obo/FYPO_0005995` #### Removed - [increased lncRNA level](http://purl.obolibrary.org/obo/FYPO_0005995) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased lncRNA level](http://purl.obolibrary.org/obo/FYPO_0005995) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased mature 25S rRNA level `http://purl.obolibrary.org/obo/FYPO_0006075` #### Removed - [increased mature 25S rRNA level](http://purl.obolibrary.org/obo/FYPO_0006075) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased mature 25S rRNA level](http://purl.obolibrary.org/obo/FYPO_0006075) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased mature 5.8SL rRNA level `http://purl.obolibrary.org/obo/FYPO_0003675` #### Removed - [increased mature 5.8SL rRNA level](http://purl.obolibrary.org/obo/FYPO_0003675) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased mature 5.8SL rRNA level](http://purl.obolibrary.org/obo/FYPO_0003675) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased mature ncRNA level `http://purl.obolibrary.org/obo/FYPO_0006467` #### Removed - [increased mature ncRNA level](http://purl.obolibrary.org/obo/FYPO_0006467) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([increased concentration](http://purl.obolibrary.org/obo/PATO_0001162) and ([exists_during](http://purl.obolibrary.org/obo/GOREL_0000032) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690)) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [vegetative cell (sensu Fungi)](http://purl.obolibrary.org/obo/CL_0000334)) and ([towards](http://purl.obolibrary.org/obo/RO_0002503) some [ncRNA](http://purl.obolibrary.org/obo/SO_0000655))) - [increased mature ncRNA level](http://purl.obolibrary.org/obo/FYPO_0006467) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased mature ncRNA level](http://purl.obolibrary.org/obo/FYPO_0006467) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased mature rRNA level `http://purl.obolibrary.org/obo/FYPO_0005507` #### Removed - [increased mature rRNA level](http://purl.obolibrary.org/obo/FYPO_0005507) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased mature rRNA level](http://purl.obolibrary.org/obo/FYPO_0005507) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased mature snRNA level `http://purl.obolibrary.org/obo/FYPO_0004206` #### Removed - [increased mature snRNA level](http://purl.obolibrary.org/obo/FYPO_0004206) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased mature snRNA level](http://purl.obolibrary.org/obo/FYPO_0004206) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased mature tRNA level during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0002564` #### Removed - [increased mature tRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0002564) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased mature tRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0002564) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased ncRNA level during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0008146` #### Added - [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of non-coding RNA transcribed measured in a cell is higher than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25989903" - [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-12-29T19:42:09Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased ncRNA level during vegetative growth"@en - [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - Class: [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) - [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([increased concentration](http://purl.obolibrary.org/obo/PATO_0001162) and ([exists_during](http://purl.obolibrary.org/obo/GOREL_0000032) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690)) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [vegetative cell (sensu Fungi)](http://purl.obolibrary.org/obo/CL_0000334)) and ([towards](http://purl.obolibrary.org/obo/RO_0002503) some [ncRNA](http://purl.obolibrary.org/obo/SO_0000655))) - [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) ### increased polyadenylated rRNA level `http://purl.obolibrary.org/obo/FYPO_0008091` #### Removed - [increased polyadenylated rRNA level](http://purl.obolibrary.org/obo/FYPO_0008091) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased polyadenylated rRNA level](http://purl.obolibrary.org/obo/FYPO_0008091) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased pre-tRNA level during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0006749` #### Removed - [increased pre-tRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0006749) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased pre-tRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0006749) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased rRNA precursor level `http://purl.obolibrary.org/obo/FYPO_0003600` #### Removed - [increased rRNA precursor level](http://purl.obolibrary.org/obo/FYPO_0003600) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased rRNA precursor level](http://purl.obolibrary.org/obo/FYPO_0003600) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased siRNA level `http://purl.obolibrary.org/obo/FYPO_0004207` #### Removed - [increased siRNA level](http://purl.obolibrary.org/obo/FYPO_0004207) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased siRNA level](http://purl.obolibrary.org/obo/FYPO_0004207) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased telomeric transcript level `http://purl.obolibrary.org/obo/FYPO_0004573` #### Removed - [increased telomeric transcript level](http://purl.obolibrary.org/obo/FYPO_0004573) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [increased telomeric transcript level](http://purl.obolibrary.org/obo/FYPO_0004573) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### normal nuclear export `http://purl.obolibrary.org/obo/FYPO_0000509` #### Removed - [normal nuclear export](http://purl.obolibrary.org/obo/FYPO_0000509) SubClassOf [normal cellular process during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001319) #### Added - [normal nuclear export](http://purl.obolibrary.org/obo/FYPO_0000509) SubClassOf [normal nucleocytoplasmic transport](http://purl.obolibrary.org/obo/FYPO_0008138) ### normal nuclear import `http://purl.obolibrary.org/obo/FYPO_0000516` #### Removed - [normal nuclear import](http://purl.obolibrary.org/obo/FYPO_0000516) SubClassOf [normal cellular process during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001319) #### Added - [normal nuclear import](http://purl.obolibrary.org/obo/FYPO_0000516) SubClassOf [normal nucleocytoplasmic transport](http://purl.obolibrary.org/obo/FYPO_0008138) ### normal nucleocytoplasmic transport `http://purl.obolibrary.org/obo/FYPO_0008138` #### Added - [normal nucleocytoplasmic transport](http://purl.obolibrary.org/obo/FYPO_0008138) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [normal nucleocytoplasmic transport](http://purl.obolibrary.org/obo/FYPO_0008138) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleocytoplasmic tranport is normal (i.e. indistinguishable from wild type). Nucleocytoplasmic transportport is the directed movement of any substance into or out of the nucleus; import or export of all substances or a specific substance may be affected." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:11839792" - [normal nucleocytoplasmic transport](http://purl.obolibrary.org/obo/FYPO_0008138) [label](http://www.w3.org/2000/01/rdf-schema#label) "normal nucleocytoplasmic transport"@en - [normal nucleocytoplasmic transport](http://purl.obolibrary.org/obo/FYPO_0008138) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2023-12-29T18:52:02Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - Class: [normal nucleocytoplasmic transport](http://purl.obolibrary.org/obo/FYPO_0008138) - [normal nucleocytoplasmic transport](http://purl.obolibrary.org/obo/FYPO_0008138) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([quality](http://purl.obolibrary.org/obo/PATO_0000001) and ([happens_during](http://purl.obolibrary.org/obo/GOREL_0000001) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690)) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [nucleocytoplasmic transport](http://purl.obolibrary.org/obo/GO_0006913)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [normal](http://purl.obolibrary.org/obo/PATO_0000461))) - [normal nucleocytoplasmic transport](http://purl.obolibrary.org/obo/FYPO_0008138) SubClassOf [normal cellular process during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001319) ### nuclear envelope protrusion present during mitosis `http://purl.obolibrary.org/obo/FYPO_0003788` #### Removed - [nuclear envelope protrusion present during mitosis](http://purl.obolibrary.org/obo/FYPO_0003788) SubClassOf [abnormal nuclear envelope morphology during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000769) #### Added - [nuclear envelope protrusion present during mitosis](http://purl.obolibrary.org/obo/FYPO_0003788) SubClassOf [abnormal nuclear envelope morphology during mitosis](http://purl.obolibrary.org/obo/FYPO_0003779) ### small mitochondria `http://purl.obolibrary.org/obo/FYPO_0007193` #### Removed - [small mitochondria](http://purl.obolibrary.org/obo/FYPO_0007193) [label](http://www.w3.org/2000/01/rdf-schema#label) "small mitochondria" #### Added - [small mitochondria](http://purl.obolibrary.org/obo/FYPO_0007193) [label](http://www.w3.org/2000/01/rdf-schema#label) "small fragmented mitochondria" ### small mitochondria with decreased mitochondrial volume `http://purl.obolibrary.org/obo/FYPO_0007611` #### Removed - [small mitochondria with decreased mitochondrial volume](http://purl.obolibrary.org/obo/FYPO_0007611) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which mitochondria are smaller, and the total volume of all mitochondria in the cell is lower, than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:31562247" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [small mitochondria with decreased mitochondrial volume](http://purl.obolibrary.org/obo/FYPO_0007611) [label](http://www.w3.org/2000/01/rdf-schema#label) "small mitochondria with decreased mitochondrial volume" #### Added - [small mitochondria with decreased mitochondrial volume](http://purl.obolibrary.org/obo/FYPO_0007611) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which mitochondria are smaller, and the total number of mitochondria in the cell is lower, than normal. Total mitochondrial volume is therefore lower than normal normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:31562247" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [small mitochondria with decreased mitochondrial volume](http://purl.obolibrary.org/obo/FYPO_0007611) [label](http://www.w3.org/2000/01/rdf-schema#label) "small fragmented mitochondria present in decreased numbers"
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```