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pombase / fypo

Fission Yeast Phenotype Ontology
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‘closes #4469

Closed ValWood closed 5 months ago

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Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### abnormal RNA splicing `http://purl.obolibrary.org/obo/FYPO_0002915` #### Removed - [abnormal RNA splicing](http://purl.obolibrary.org/obo/FYPO_0002915) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which RNA splicing is abnormal. All RNA splicing may be abnormal, or one splicing of or more specific RNA molecules may be selectively affected." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [abnormal RNA splicing](http://purl.obolibrary.org/obo/FYPO_0002915) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([quality](http://purl.obolibrary.org/obo/PATO_0000001) and ([happens_during](http://purl.obolibrary.org/obo/GOREL_0000001) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690)) and ([characteristic of part of](http://purl.obolibrary.org/obo/RO_0002314) some [RNA splicing, via transesterification reactions with bulged adenosine as nucleophile](http://purl.obolibrary.org/obo/GO_0000377)) and ([has modifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) #### Added - [abnormal RNA splicing](http://purl.obolibrary.org/obo/FYPO_0002915) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which RNA splicing is abnormal. All RNA splicing may be abnormal, or one splicing of or more specific RNA molecules may be selectively affected." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [abnormal RNA splicing](http://purl.obolibrary.org/obo/FYPO_0002915) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([quality](http://purl.obolibrary.org/obo/PATO_0000001) and ([characteristic of part of](http://purl.obolibrary.org/obo/RO_0002314) some [RNA splicing, via transesterification reactions with bulged adenosine as nucleophile](http://purl.obolibrary.org/obo/GO_0000377)) and ([has modifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) ### abnormal mRNA splicing, via spliceosome `http://purl.obolibrary.org/obo/FYPO_0000189` #### Removed - [abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0000189) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA splicing via the spliceosome is abnormal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0000189) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([quality](http://purl.obolibrary.org/obo/PATO_0000001) and ([happens_during](http://purl.obolibrary.org/obo/GOREL_0000001) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690)) and ([characteristic of part of](http://purl.obolibrary.org/obo/RO_0002314) some [mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/GO_0000398)) and ([has modifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) - [abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0000189) SubClassOf [RNA metabolism phenotype](http://purl.obolibrary.org/obo/FYPO_0000294) #### Added - [abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0000189) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which mRNA splicing via the spliceosome is abnormal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0000189) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([quality](http://purl.obolibrary.org/obo/PATO_0000001) and ([characteristic of part of](http://purl.obolibrary.org/obo/RO_0002314) some [mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/GO_0000398)) and ([has modifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) - [abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0000189) SubClassOf [abnormal RNA splicing](http://purl.obolibrary.org/obo/FYPO_0002915) ### decreased mRNA splicing, meiotic genes `http://purl.obolibrary.org/obo/FYPO_0008147` #### Added - [decreased mRNA splicing, meiotic genes](http://purl.obolibrary.org/obo/FYPO_0008147) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mRNA splicing of meiosis specific genes is decreased during meiosis." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:27365210" - [decreased mRNA splicing, meiotic genes](http://purl.obolibrary.org/obo/FYPO_0008147) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [decreased mRNA splicing, meiotic genes](http://purl.obolibrary.org/obo/FYPO_0008147) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-01-19T10:08:19Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [decreased mRNA splicing, meiotic genes](http://purl.obolibrary.org/obo/FYPO_0008147) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased mRNA splicing, meiotic genes"@en - Class: [decreased mRNA splicing, meiotic genes](http://purl.obolibrary.org/obo/FYPO_0008147) - [decreased mRNA splicing, meiotic genes](http://purl.obolibrary.org/obo/FYPO_0008147) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([decreased occurrence](http://purl.obolibrary.org/obo/PATO_0002052) and ([characteristic of](http://purl.obolibrary.org/obo/RO_0000052) some ([mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/GO_0000398) and ([happens during](http://purl.obolibrary.org/obo/RO_0002092) some [meiotic cell cycle phase](http://purl.obolibrary.org/obo/GO_0098762))))) - [decreased mRNA splicing, meiotic genes](http://purl.obolibrary.org/obo/FYPO_0008147) SubClassOf [decreased mRNA splicing, via spliceosome, intron-specific](http://purl.obolibrary.org/obo/FYPO_0003244) ### decreased mRNA splicing, via spliceosome `http://purl.obolibrary.org/obo/FYPO_0003029` #### Removed - [decreased mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003029) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mRNA splicing via the spliceosome is decreased." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24298023" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [decreased mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003029) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([decreased occurrence](http://purl.obolibrary.org/obo/PATO_0002052) and ([characteristic of](http://purl.obolibrary.org/obo/RO_0000052) some ([mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/GO_0000398) and ([happens during](http://purl.obolibrary.org/obo/RO_0002092) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690))))) #### Added - [decreased mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003029) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which the occurrence of mRNA splicing via the spliceosome is decreased." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:24298023" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" ### decreased mRNA splicing, via spliceosome, intron-specific `http://purl.obolibrary.org/obo/FYPO_0003244` #### Removed - [decreased mRNA splicing, via spliceosome, intron-specific](http://purl.obolibrary.org/obo/FYPO_0003244) SubClassOf [abnormal mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0000189) #### Added - [decreased mRNA splicing, via spliceosome, intron-specific](http://purl.obolibrary.org/obo/FYPO_0003244) SubClassOf [decreased mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003029) ### decreased nucleosome occupancy at centromere central core `http://purl.obolibrary.org/obo/FYPO_0005524` #### Removed - [decreased nucleosome occupancy at centromere central core](http://purl.obolibrary.org/obo/FYPO_0005524) SubClassOf [abnormal nucleosome positioning in heterochromatin](http://purl.obolibrary.org/obo/FYPO_0000855) ### decreased nucleosome occupancy at centromere inner repeat `http://purl.obolibrary.org/obo/FYPO_0005525` #### Removed - [decreased nucleosome occupancy at centromere inner repeat](http://purl.obolibrary.org/obo/FYPO_0005525) SubClassOf [decreased nucleosome occupancy](http://purl.obolibrary.org/obo/FYPO_0004491) #### Added - [decreased nucleosome occupancy at centromere inner repeat](http://purl.obolibrary.org/obo/FYPO_0005525) SubClassOf [decreased nucleosome occupancy at centromeric heterochromatin](http://purl.obolibrary.org/obo/FYPO_0008151) ### decreased nucleosome occupancy at centromeric heterochromatin `http://purl.obolibrary.org/obo/FYPO_0008151` #### Added - [decreased nucleosome occupancy at centromeric heterochromatin](http://purl.obolibrary.org/obo/FYPO_0008151) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [decreased nucleosome occupancy at centromeric heterochromatin](http://purl.obolibrary.org/obo/FYPO_0008151) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased nucleosome occupancy at centromeric heterochromatin"@en - [decreased nucleosome occupancy at centromeric heterochromatin](http://purl.obolibrary.org/obo/FYPO_0008151) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-01-19T11:21:29Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [decreased nucleosome occupancy at centromeric heterochromatin](http://purl.obolibrary.org/obo/FYPO_0008151) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome occupancy is lower than normal in the pericentromeres. Nucleosome occupancy measures the tendency for DNA in a given region to be packaged into nucleosomes." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21211723" - Class: [decreased nucleosome occupancy at centromeric heterochromatin](http://purl.obolibrary.org/obo/FYPO_0008151) - [decreased nucleosome occupancy at centromeric heterochromatin](http://purl.obolibrary.org/obo/FYPO_0008151) SubClassOf [decreased nucleosome occupancy](http://purl.obolibrary.org/obo/FYPO_0004491) - [decreased nucleosome occupancy at centromeric heterochromatin](http://purl.obolibrary.org/obo/FYPO_0008151) SubClassOf [abnormal nucleosome positioning in heterochromatin](http://purl.obolibrary.org/obo/FYPO_0000855) ### decreased splicing of mRNA introns with low A/U content `http://purl.obolibrary.org/obo/FYPO_0003242` #### Removed - [decreased splicing of mRNA introns with low A/U content](http://purl.obolibrary.org/obo/FYPO_0003242) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mRNA splicing via the spliceosome is decreased, where introns have low A/U content." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23754748" - [decreased splicing of mRNA introns with low A/U content](http://purl.obolibrary.org/obo/FYPO_0003242) SubClassOf [decreased mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003029) #### Added - [decreased splicing of mRNA introns with low A/U content](http://purl.obolibrary.org/obo/FYPO_0003242) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which the occurrence of mRNA splicing via the spliceosome is decreased, where introns have low A/U content." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:23754748" ### decreased splicing of mRNA introns with nonconsensus cis-splicing sequences `http://purl.obolibrary.org/obo/FYPO_0007199` #### Removed - [decreased splicing of mRNA introns with nonconsensus cis-splicing sequences](http://purl.obolibrary.org/obo/FYPO_0007199) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of mRNA splicing via the spliceosome of introns that have one or more deviations from optimal cis-splicing sequences is decreased. Nonconsensus features may include a longer distance between the branch point and 3' splice site, lacking a polypyrimidine tract, or use of alternative 5' splice sites." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28446597" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [decreased splicing of mRNA introns with nonconsensus cis-splicing sequences](http://purl.obolibrary.org/obo/FYPO_0007199) SubClassOf [decreased mRNA splicing, via spliceosome](http://purl.obolibrary.org/obo/FYPO_0003029) #### Added - [decreased splicing of mRNA introns with nonconsensus cis-splicing sequences](http://purl.obolibrary.org/obo/FYPO_0007199) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which the occurrence of mRNA splicing via the spliceosome of introns that have one or more deviations from optimal cis-splicing sequences is decreased. Nonconsensus features may include a longer distance between the branch point and 3' splice site, lacking a polypyrimidine tract, or use of alternative 5' splice sites." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28446597" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" ### increased CUT RNA level `http://purl.obolibrary.org/obo/FYPO_0008148` #### Added - [increased CUT RNA level](http://purl.obolibrary.org/obo/FYPO_0008148) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased CUT RNA level"@en - [increased CUT RNA level](http://purl.obolibrary.org/obo/FYPO_0008148) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of transcribed cryptic unstable trancripts (CUTs) measured in a cell is higher than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25989903" - [increased CUT RNA level](http://purl.obolibrary.org/obo/FYPO_0008148) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-01-19T10:33:22Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased CUT RNA level](http://purl.obolibrary.org/obo/FYPO_0008148) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - Class: [increased CUT RNA level](http://purl.obolibrary.org/obo/FYPO_0008148) - [increased CUT RNA level](http://purl.obolibrary.org/obo/FYPO_0008148) SubClassOf [increased non functional ncRNA level](http://purl.obolibrary.org/obo/FYPO_0008149) ### increased RNA level during G0 `http://purl.obolibrary.org/obo/FYPO_0002945` #### Added - [increased RNA level during G0](http://purl.obolibrary.org/obo/FYPO_0002945) SubClassOf [increased RNA level](http://purl.obolibrary.org/obo/FYPO_0001890) ### increased intron retention `http://purl.obolibrary.org/obo/FYPO_0008113` #### Removed - [increased intron retention](http://purl.obolibrary.org/obo/FYPO_0008113) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which introns are retained at some, but not all introns at a higher level with increased frequency. Weak donor sequences are more affected." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:37403782" #### Added - [increased intron retention](http://purl.obolibrary.org/obo/FYPO_0008113) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which introns are retained at some, but not all introns at a higher level with increased frequency. Weak donor sequences are more affected." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:37403782" ### increased non functional ncRNA level `http://purl.obolibrary.org/obo/FYPO_0008149` #### Added - [increased non functional ncRNA level](http://purl.obolibrary.org/obo/FYPO_0008149) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-01-19T10:36:06Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased non functional ncRNA level](http://purl.obolibrary.org/obo/FYPO_0008149) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [increased non functional ncRNA level](http://purl.obolibrary.org/obo/FYPO_0008149) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of non-functional non-coding RNA transcribed measured in a cell is higher than normal." - [increased non functional ncRNA level](http://purl.obolibrary.org/obo/FYPO_0008149) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased non functional ncRNA level"@en - Class: [increased non functional ncRNA level](http://purl.obolibrary.org/obo/FYPO_0008149) - [increased non functional ncRNA level](http://purl.obolibrary.org/obo/FYPO_0008149) SubClassOf [increased ncRNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008146) ### increased rDNA antisense siRNA level `http://purl.obolibrary.org/obo/FYPO_0004815` #### Removed - [increased rDNA antisense siRNA level](http://purl.obolibrary.org/obo/FYPO_0004815) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased rDNA antisense small RNA level" - [increased rDNA antisense siRNA level](http://purl.obolibrary.org/obo/FYPO_0004815) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of small RNA (such as siRNA) derived from antisense transcription of ribosomal DNA measured in a cell is greater than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25417108" #### Added - [increased rDNA antisense siRNA level](http://purl.obolibrary.org/obo/FYPO_0004815) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased rDNA antisense siRNA level" - [increased rDNA antisense siRNA level](http://purl.obolibrary.org/obo/FYPO_0004815) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of siRNA derived from antisense transcription of ribosomal DNA measured in a cell is greater than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25417108" ### increased rDNA intergenic repeat RNA level `http://purl.obolibrary.org/obo/FYPO_0008150` #### Added - [increased rDNA intergenic repeat RNA level](http://purl.obolibrary.org/obo/FYPO_0008150) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased rDNA intergenic repeat RNA level"@en - [increased rDNA intergenic repeat RNA level](http://purl.obolibrary.org/obo/FYPO_0008150) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "fission_yeast_phenotype" - [increased rDNA intergenic repeat RNA level](http://purl.obolibrary.org/obo/FYPO_0008150) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which the amount of RNA derived from rDNA intergenic repeat regions is higher than normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." - [increased rDNA intergenic repeat RNA level](http://purl.obolibrary.org/obo/FYPO_0008150) [id](http://www.geneontology.org/formats/oboInOwl#id) "FYPO:0005917" - [increased rDNA intergenic repeat RNA level](http://purl.obolibrary.org/obo/FYPO_0008150) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [increased rDNA intergenic repeat RNA level](http://purl.obolibrary.org/obo/FYPO_0008150) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-01-19T11:08:32Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - Class: [increased rDNA intergenic repeat RNA level](http://purl.obolibrary.org/obo/FYPO_0008150) - [increased rDNA intergenic repeat RNA level](http://purl.obolibrary.org/obo/FYPO_0008150) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) ### increased subtelomeric heterochromatin RNA level `http://purl.obolibrary.org/obo/FYPO_0005917` #### Removed - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "increased transcription at subtelomeric heterochromatin during vegetative growth" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "increased transcription from subtelomeric heterochromatin" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:al" - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased transcription at subtelomeric heterochromatin" - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "increased transcription at subtelomeric heterochromatin during mitotic cell cycle" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "increased transcription at subtelomere" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a greater extent than normal in subtelomeric regions. All genes, or a specific subset of genes, may be affected." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25798942" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "increased transcription from subtelomeric heterochromatin during vegetative growth" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:al" - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) SubClassOf [increased transcription during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000780) #### Added - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "increased transcription at subtelomere" - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) [has_narrow_synonym](http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym) "increased transcription at subtelomeric heterochromatin during vegetative growth" - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased subtelomeric heterochromatin RNA level" - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which the amount of RNA derived from subtelomeric heterochromatin regions is higher than normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:25798942" - [increased subtelomeric heterochromatin RNA level](http://purl.obolibrary.org/obo/FYPO_0005917) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) ### obsolete abolished short range intra-arm mitotic chromosome condensation during interphase `http://purl.obolibrary.org/obo/FYPO_0006244` #### Removed - [obsolete abolished short range intra-arm mitotic chromosome condensation during interphase](http://purl.obolibrary.org/obo/FYPO_0006244) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abolished short range intra-arm chromosome condensation during mitotic interphase" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [obsolete abolished short range intra-arm mitotic chromosome condensation during interphase](http://purl.obolibrary.org/obo/FYPO_0006244) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abolished short range intra-arm chromosome condensation during interphase of mitotic cell cycle" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [obsolete abolished short range intra-arm mitotic chromosome condensation during interphase](http://purl.obolibrary.org/obo/FYPO_0006244) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abolished short range intra-arm mitotic chromosome condensation during interphase during vegetative growth" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [obsolete abolished short range intra-arm mitotic chromosome condensation during interphase](http://purl.obolibrary.org/obo/FYPO_0006244) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "short range intra-arm mitotic chromosome condensation abolished during interphase" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" ### obsolete increased chromatin-associated RNA level `http://purl.obolibrary.org/obo/FYPO_0006113` #### Removed - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "fission_yeast_phenotype" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "increased RNA level on chromatin" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28404620" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription." - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2017-07-12T12:03:36Z" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "increased RNA level in chromatin" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "increased chromatin-associated RNA level during mitotic cell cycle" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "midori" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA found associated with chromatin is higher than normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:28404620" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "increased chromatin-associated RNA accumulation" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "increased chromatin-associated transcript level" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:vw" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased chromatin-associated RNA level" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [id](http://www.geneontology.org/formats/oboInOwl#id) "FYPO:0006113" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "increased chromatin-associated RNA level during vegetative growth" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) SubClassOf [altered rRNA or precursor level](http://purl.obolibrary.org/obo/FYPO_0005996) - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) SubClassOf [increased RNA level during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000825) #### Added - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "This term was made obsolete because its meaning was unclear." - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [label](http://www.w3.org/2000/01/rdf-schema#label) "obsolete increased chromatin-associated RNA level" - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "OBSOLETE. Consider annotating to a term describing abnormal transcription or abnormal regulation of transcription, but note that changes in RNA levels may result from changes in RNA stability as well as changes in transcription." - [obsolete increased chromatin-associated RNA level](http://purl.obolibrary.org/obo/FYPO_0006113) [deprecated](http://www.w3.org/2002/07/owl#deprecated) true
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```