pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
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closes #4502 #4503

Closed ValWood closed 6 months ago

github-actions[bot] commented 6 months ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### abnormal protein localization to kinetochore during mitotic M phase `http://purl.obolibrary.org/obo/FYPO_0008164` #### Added - [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is abnormal during mitotic M-phase." - [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164) [label](http://www.w3.org/2000/01/rdf-schema#label) "abnormal protein localization to kinetochore during mitotic M phase"@en - [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-03-20T09:26:50Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - Class: [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164) - [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([quality](http://purl.obolibrary.org/obo/PATO_0000001) and ([happens_during](http://purl.obolibrary.org/obo/GOREL_0000001) some [mitotic M phase](http://purl.obolibrary.org/obo/GO_0000087)) and ([inheres in part of](http://purl.obolibrary.org/obo/RO_0002314) some [protein localization to kinetochore](http://purl.obolibrary.org/obo/GO_0034501)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) - [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164) SubClassOf [abnormal protein localization to kinetochore during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001268) ### abnormal protein localization to kinetochore during mitotic anaphase `http://purl.obolibrary.org/obo/FYPO_0007401` #### Removed - [abnormal protein localization to kinetochore during mitotic anaphase](http://purl.obolibrary.org/obo/FYPO_0007401) SubClassOf [abnormal protein localization to kinetochore during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001268) #### Added - [abnormal protein localization to kinetochore during mitotic anaphase](http://purl.obolibrary.org/obo/FYPO_0007401) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([quality](http://purl.obolibrary.org/obo/PATO_0000001) and ([happens_during](http://purl.obolibrary.org/obo/GOREL_0000001) some [mitotic anaphase](http://purl.obolibrary.org/obo/GO_0000090)) and ([inheres in part of](http://purl.obolibrary.org/obo/RO_0002314) some [protein localization to kinetochore](http://purl.obolibrary.org/obo/GO_0034501)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) - [abnormal protein localization to kinetochore during mitotic anaphase](http://purl.obolibrary.org/obo/FYPO_0007401) SubClassOf [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164) ### abnormal protein localization to kinetochore during mitotic interphase `http://purl.obolibrary.org/obo/FYPO_0007174` #### Removed - [abnormal protein localization to kinetochore during mitotic interphase](http://purl.obolibrary.org/obo/FYPO_0007174) SubClassOf [abnormal protein localization during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000443) ### abolished protein localization to heterochromatin at silent mating-type cassette during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0008153` #### Added - [abolished protein localization to heterochromatin at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008153) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to heterochromatin at the silent mating-type cassette is abolished." ### abolished protein localization to kinetochore during mitotic metaphase `http://purl.obolibrary.org/obo/FYPO_0005210` #### Removed - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) [label](http://www.w3.org/2000/01/rdf-schema#label) "abolished protein localization to kinetochore during mitotic metaphase" - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome does not occur during metaphase of mitosis." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) [id](http://www.geneontology.org/formats/oboInOwl#id) "FYPO:0005210" - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "midori" - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "protein localization to kinetochore abolished during mitotic metaphase" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "We recommend noting which protein(s) were used in the assay when annotating to this term." - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abolished protein localization to kinetochore during metaphase of mitosis" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2016-01-20T13:44:39Z" - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abolished protein localisation to kinetochore during mitotic metaphase during vegetative growth" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "fission_yeast_phenotype" - Class: [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([lacking processual parts](http://purl.obolibrary.org/obo/PATO_0001558) and ([during](http://purl.obolibrary.org/obo/GOREL_0000002) some [mitotic metaphase](http://purl.obolibrary.org/obo/GO_0000089)) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [protein localization to kinetochore](http://purl.obolibrary.org/obo/GO_0034501)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) - [abolished protein localization to kinetochore during mitotic metaphase](http://purl.obolibrary.org/obo/FYPO_0005210) SubClassOf [abnormal protein localization to kinetochore during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001268) ### abolished protein localization to kinetochore during mitotic prometaphase `http://purl.obolibrary.org/obo/FYPO_0008166` #### Added - [abolished protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008166) [label](http://www.w3.org/2000/01/rdf-schema#label) "abolished protein localization to kinetochore during mitotic prometaphase"@en - [abolished protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008166) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [abolished protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008166) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-03-20T09:43:57Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [abolished protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008166) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome does not occur during prometaphase of mitosis." - Class: [abolished protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008166) - [abolished protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008166) SubClassOf [decreased protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008165) ### abolished protein localization to kinetochore during mitotic spindle assembly checkpoint signaling `http://purl.obolibrary.org/obo/FYPO_0007383` #### Removed - [abolished protein localization to kinetochore during mitotic spindle assembly checkpoint signaling](http://purl.obolibrary.org/obo/FYPO_0007383) SubClassOf [abnormal protein localization to kinetochore during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001268) #### Added - [abolished protein localization to kinetochore during mitotic spindle assembly checkpoint signaling](http://purl.obolibrary.org/obo/FYPO_0007383) SubClassOf [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164) ### abolished protein localization to kinetochore during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0001269` #### Removed - [abolished protein localization to kinetochore during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001269) SubClassOf [abnormal protein localization to kinetochore during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001268) #### Added - [abolished protein localization to kinetochore during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001269) SubClassOf [decreased protein localization to kinetochore during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0002902) ### decreased protein localization to kinetochore during mitotic M phase `http://purl.obolibrary.org/obo/FYPO_0005215` #### Removed - [decreased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005215) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is decreased during mitosis." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [decreased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005215) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased protein localization to kinetochore during mitosis" - [decreased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005215) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([decreased occurrence](http://purl.obolibrary.org/obo/PATO_0002052) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some ([protein localization to kinetochore](http://purl.obolibrary.org/obo/GO_0034501) and ([happens during](http://purl.obolibrary.org/obo/RO_0002092) some [mitotic nuclear division](http://purl.obolibrary.org/obo/GO_0140014))))) - [decreased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005215) SubClassOf [abnormal protein localization to kinetochore during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001268) #### Added - [decreased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005215) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is decreased during mitotic M phase" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [decreased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005215) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased protein localization to kinetochore during mitotic M phase" - [decreased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005215) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([decreased occurrence](http://purl.obolibrary.org/obo/PATO_0002052) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some ([protein localization to kinetochore](http://purl.obolibrary.org/obo/GO_0034501) and ([happens during](http://purl.obolibrary.org/obo/RO_0002092) some [mitotic M phase](http://purl.obolibrary.org/obo/GO_0000087))))) - [decreased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005215) SubClassOf [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164) - [decreased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005215) SubClassOf [decreased protein localization to kinetochore during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0002902) ### decreased protein localization to kinetochore during mitotic prometaphase `http://purl.obolibrary.org/obo/FYPO_0008165` #### Added - [decreased protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008165) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased protein localization to kinetochore during mitotic prometaphase"@en - [decreased protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008165) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-03-20T09:42:03Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [decreased protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008165) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is decreased during prometaphase of mitosis." - [decreased protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008165) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - Class: [decreased protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008165) - [decreased protein localization to kinetochore during mitotic prometaphase](http://purl.obolibrary.org/obo/FYPO_0008165) SubClassOf [decreased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005215) ### increased protein localization to kinetochore during mitotic M phase `http://purl.obolibrary.org/obo/FYPO_0005735` #### Removed - [increased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005735) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased protein localization to kinetochore during mitosis" - [increased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005735) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is increased during mitosis." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [increased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005735) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([increased occurrence](http://purl.obolibrary.org/obo/PATO_0002051) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some ([protein localization to kinetochore](http://purl.obolibrary.org/obo/GO_0034501) and ([happens during](http://purl.obolibrary.org/obo/RO_0002092) some [mitotic nuclear division](http://purl.obolibrary.org/obo/GO_0140014))))) - [increased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005735) SubClassOf [abnormal protein localization to kinetochore during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001268) #### Added - [increased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005735) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is increased during mitotic M-phase." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [increased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005735) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased protein localization to kinetochore during mitotic M phase" - [increased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005735) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([increased occurrence](http://purl.obolibrary.org/obo/PATO_0002051) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some ([protein localization to kinetochore](http://purl.obolibrary.org/obo/GO_0034501) and ([happens during](http://purl.obolibrary.org/obo/RO_0002092) some [mitotic M phase](http://purl.obolibrary.org/obo/GO_0000087))))) - [increased protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0005735) SubClassOf [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164)
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```