pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
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closes #4500; v#4501 #4504

Closed ValWood closed 3 months ago

github-actions[bot] commented 3 months ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### increased histone H4-K16 acetylation at silent mating-type cassette during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0008174` #### Added - [increased histone H4-K16 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008174) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the acetylation of lysine at position 16 of histone H4 in silent mating-type cassettes occurs to a higher extent than normal." - [increased histone H4-K16 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008174) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-03-20T10:52:51Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased histone H4-K16 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008174) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased histone H4-K16 acetylation at silent mating-type cassette during vegetative growth"@en - [increased histone H4-K16 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008174) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - Class: [increased histone H4-K16 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008174) - [increased histone H4-K16 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008174) SubClassOf [increased histone H4-K16 acetylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0007632) ### increased histone H4-K5 acetylation at silent mating-type cassette during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0008172` #### Added - [increased histone H4-K5 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008172) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-03-20T10:47:36Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased histone H4-K5 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008172) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 5 of histone H4 at the silent mating type cassette occurs to a greater extent than normal." - [increased histone H4-K5 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008172) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased histone H4-K5 acetylation at silent mating-type cassette during vegetative growth"@en - [increased histone H4-K5 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008172) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - Class: [increased histone H4-K5 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008172) - [increased histone H4-K5 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008172) SubClassOf [increased histone H4-K5 acetylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0005309) ### increased histone H4-K8 acetylation at silent mating-type cassette during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0008173` #### Added - [increased histone H4-K8 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008173) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-03-20T10:50:35Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased histone H4-K8 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008173) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [increased histone H4-K8 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008173) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased histone H4-K8 acetylation at silent mating-type cassette during vegetative growth"@en - [increased histone H4-K8 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008173) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the acetylation of lysine at position 8 of histone H4 in silent mating-type cassettes occurs to a higher extent than normal." - Class: [increased histone H4-K8 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008173) - [increased histone H4-K8 acetylation at silent mating-type cassette during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008173) SubClassOf [increased histone H4-K8 acetylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0005308) ### sensitivite to trolox `http://purl.obolibrary.org/obo/FYPO_0008167` #### Added - [sensitivite to trolox](http://purl.obolibrary.org/obo/FYPO_0008167) [label](http://www.w3.org/2000/01/rdf-schema#label) "sensitivite to trolox"@en - [sensitivite to trolox](http://purl.obolibrary.org/obo/FYPO_0008167) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [sensitivite to trolox](http://purl.obolibrary.org/obo/FYPO_0008167) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to trolox. Cells stop growing (and may die) at a concentration of trolox that allows wild type cells to grow." - [sensitivite to trolox](http://purl.obolibrary.org/obo/FYPO_0008167) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-03-20T10:23:11Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - Class: [sensitivite to trolox](http://purl.obolibrary.org/obo/FYPO_0008167) - [sensitivite to trolox](http://purl.obolibrary.org/obo/FYPO_0008167) SubClassOf [increased sensitivity to chemical during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0000127)
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```