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pombase / fypo

Fission Yeast Phenotype Ontology
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FYPO:0005210 #4514

Closed ValWood closed 3 months ago

ValWood commented 3 months ago

this term has disappeared and I don't know why

kimrutherford commented 3 months ago

Term in the OBO file looks like:

[Term]
id: FYPO:0005210
is_a: FYPO:0001269 ! abolished protein localization to kinetochore during vegetative growth

So the ID and is_a are there but everything else is missing. Very odd.

I can't see the term in fypo/src/ontology/fypo-edit.owl at all but I only looked with grep.

ValWood commented 3 months ago

I dont know how that happened, or why the CI checks didn't notice it, but I will fix today!

ValWood commented 3 months ago

I am unable to fix because I can't even locate it in protege???

ValWood commented 3 months ago

A search on the ID gives nothing...

ValWood commented 3 months ago

abnormal protein localization to kinetochore during mitotic M phase

ValWood commented 3 months ago

I have 2 terms with the same IF, but one has no ID displayed!

Screenshot 2024-03-26 at 15 08 39
ValWood commented 3 months ago

Actually they are the same term. I added the ID. I think what happened is that I accidently added a term with the same logical def, and I must have deleted FYPO:0005210 in favour of 0008164. If this all works OK we will migrate annotations from FYPO:0005210 to