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pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
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closes #4515; closes #4512; closes #4512; closes #4511; closes #4510 #4516

Closed ValWood closed 6 months ago

github-actions[bot] commented 6 months ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### abnormal protein localization to kinetochore during mitotic M phase `http://purl.obolibrary.org/obo/FYPO_0008164` #### Added - [abnormal protein localization to kinetochore during mitotic M phase](http://purl.obolibrary.org/obo/FYPO_0008164) [id](http://www.geneontology.org/formats/oboInOwl#id) "FYPO:0008164" ### abolished histone H4-K20 monomethylation during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0004216` #### Removed - [abolished histone H4-K20 monomethylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0004216) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([lacking processual parts](http://purl.obolibrary.org/obo/PATO_0001558) and ([during](http://purl.obolibrary.org/obo/GOREL_0000002) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690)) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [obsolete histone H4-K20 monomethylation](http://purl.obolibrary.org/obo/GO_0034771)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) - [abolished histone H4-K20 monomethylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0004216) SubClassOf [abolished histone methylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0002565) #### Added - [abolished histone H4-K20 monomethylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0004216) SubClassOf [decreased histone H4-K20 monomethylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008179) ### decreased cyclin-dependent protein kinase activity `http://purl.obolibrary.org/obo/FYPO_0008170` #### Added - [decreased cyclin-dependent protein kinase activity](http://purl.obolibrary.org/obo/FYPO_0008170) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [decreased cyclin-dependent protein kinase activity](http://purl.obolibrary.org/obo/FYPO_0008170) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased cyclin-dependent protein kinase activity"@en - [decreased cyclin-dependent protein kinase activity](http://purl.obolibrary.org/obo/FYPO_0008170) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A molecular function phenotype in which the observed rate of a cyclin-dependent protein kinase activity is decreased." - [decreased cyclin-dependent protein kinase activity](http://purl.obolibrary.org/obo/FYPO_0008170) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-03-26T14:46:00Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - Class: [decreased cyclin-dependent protein kinase activity](http://purl.obolibrary.org/obo/FYPO_0008170) - [decreased cyclin-dependent protein kinase activity](http://purl.obolibrary.org/obo/FYPO_0008170) SubClassOf [decreased protein kinase activity](http://purl.obolibrary.org/obo/FYPO_0001382) ### decreased histone H4-K20 monomethylation during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0008179` #### Added - [decreased histone H4-K20 monomethylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008179) [label](http://www.w3.org/2000/01/rdf-schema#label) "decreased histone H4-K20 monomethylation during vegetative growth"@en - [decreased histone H4-K20 monomethylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008179) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-03-26T14:54:04Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [decreased histone H4-K20 monomethylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008179) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [decreased histone H4-K20 monomethylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008179) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which monomethylation of lysine at position 20 of histone H4 is decreased." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:15550243" - Class: [decreased histone H4-K20 monomethylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008179) - [decreased histone H4-K20 monomethylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008179) SubClassOf [abnormal histone H4-K20 methylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0004215) ### increased histone H4-K20 monomethylation during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0004223` #### Removed - [increased histone H4-K20 monomethylation during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0004223) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([increased occurrence](http://purl.obolibrary.org/obo/PATO_0002051) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some ([obsolete histone H4-K20 monomethylation](http://purl.obolibrary.org/obo/GO_0034771) and ([happens during](http://purl.obolibrary.org/obo/RO_0002092) some [single-celled organism vegetative growth phase](http://purl.obolibrary.org/obo/GO_0072690))))) ### increased nuclear pore complex clustering `http://purl.obolibrary.org/obo/FYPO_0008171` #### Added - [increased nuclear pore complex clustering](http://purl.obolibrary.org/obo/FYPO_0008171) [label](http://www.w3.org/2000/01/rdf-schema#label) "increased nuclear pore complex clustering"@en - [increased nuclear pore complex clustering](http://purl.obolibrary.org/obo/FYPO_0008171) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the nuclear pore complexes are more clustered together than normal." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:35354597" - [increased nuclear pore complex clustering](http://purl.obolibrary.org/obo/FYPO_0008171) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-03-26T14:48:45Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [increased nuclear pore complex clustering](http://purl.obolibrary.org/obo/FYPO_0008171) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - Class: [increased nuclear pore complex clustering](http://purl.obolibrary.org/obo/FYPO_0008171) - [increased nuclear pore complex clustering](http://purl.obolibrary.org/obo/FYPO_0008171) SubClassOf [cellular physical quality phenotype during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0001321) ### normal actin cable morphology during mitotic interphase `http://purl.obolibrary.org/obo/FYPO_0008169` #### Added - [normal actin cable morphology during mitotic interphase](http://purl.obolibrary.org/obo/FYPO_0008169) [label](http://www.w3.org/2000/01/rdf-schema#label) "normal actin cable morphology during mitotic interphase"@en - [normal actin cable morphology during mitotic interphase](http://purl.obolibrary.org/obo/FYPO_0008169) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [normal actin cable morphology during mitotic interphase](http://purl.obolibrary.org/obo/FYPO_0008169) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-03-26T14:43:16Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [normal actin cable morphology during mitotic interphase](http://purl.obolibrary.org/obo/FYPO_0008169) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, and structure of actin cables are normal during mitotic interphase (i.e. indistinguishable from wild type)." - Class: [normal actin cable morphology during mitotic interphase](http://purl.obolibrary.org/obo/FYPO_0008169) - [normal actin cable morphology during mitotic interphase](http://purl.obolibrary.org/obo/FYPO_0008169) SubClassOf [normal actin cable morphology](http://purl.obolibrary.org/obo/FYPO_0002487) ### unequal meiotic sister chromatid segregation in meiosis I `http://purl.obolibrary.org/obo/FYPO_0003182` #### Removed - [unequal meiotic sister chromatid segregation in meiosis I](http://purl.obolibrary.org/obo/FYPO_0003182) [label](http://www.w3.org/2000/01/rdf-schema#label) "unequal meiotic sister chromatid segregation" #### Added - [unequal meiotic sister chromatid segregation in meiosis I](http://purl.obolibrary.org/obo/FYPO_0003182) [label](http://www.w3.org/2000/01/rdf-schema#label) "unequal meiotic sister chromatid segregation in meiosis I"
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```