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pombase / fypo

Fission Yeast Phenotype Ontology
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PMID:19075108 #4529

Closed PCarme closed 2 months ago

PCarme commented 2 months ago

New term : delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell exhibits randomly misoriented actin and myosin II filaments, eventually forming a regular orthogonal actomyosin contractile ring. Although the onset of filaments assembly is not delayed, the cell takes more time complete the formation of an orthogonal actomyosin contractile ring.

ValWood commented 2 months ago

For this since the meaning of "orthogonal" ring is normal (at least that is what it seems, (i.e perpendicular)

I think we can say decreased rate of actomyosin contractile ring assembly from randomly oriented actomyosin filaments

parent decreased rate of actomyosin contractile ring assembly

does that sound OK?

PCarme commented 2 months ago

If "rate of actomyosin contractile ring assembly" accounts for the increased duration of the assembly. sure. I just feel like "delayed" more clearly conveys the temporal aspect of the phenotype than "decreased rate".

ValWood commented 2 months ago

Yes OK delayed is better here. v

ValWood commented 2 months ago

@kimrutherford we need to add Pascal somewhere as PomBase:PC so I can add him as definition sources.

kimrutherford commented 2 months ago

we need to add Pascal somewhere as PomBase:PC so I can add him as definition sources.

What is the process for that?

ValWood commented 2 months ago

I think I found the file fypo/src/ontology/fypo-idranges.owl probably if I add a new ID range, I will be able to use PomBAse:PC as support for definitions. I tried to do this but it would not let me save. Will do it on next call.