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pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
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closes #4531 #4533

Closed ValWood closed 2 months ago

github-actions[bot] commented 2 months ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### abolished meiotic sister chromatid separation `http://purl.obolibrary.org/obo/FYPO_0006416` #### Removed - [abolished meiotic sister chromatid separation](http://purl.obolibrary.org/obo/FYPO_0006416) [id](http://www.geneontology.org/formats/oboInOwl#id) "FYPO:0006416" - [abolished meiotic sister chromatid separation](http://purl.obolibrary.org/obo/FYPO_0006416) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which the occurrence of meiotic sister chromatid separation does not occur." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [abolished meiotic sister chromatid separation](http://purl.obolibrary.org/obo/FYPO_0006416) [label](http://www.w3.org/2000/01/rdf-schema#label) "abolished meiotic sister chromatid separation" - [abolished meiotic sister chromatid separation](http://purl.obolibrary.org/obo/FYPO_0006416) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "abolished chromosome separation during meiosis II" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:al" - [abolished meiotic sister chromatid separation](http://purl.obolibrary.org/obo/FYPO_0006416) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "fission_yeast_phenotype" - [abolished meiotic sister chromatid separation](http://purl.obolibrary.org/obo/FYPO_0006416) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2018-03-01T14:55:37Z" - [abolished meiotic sister chromatid separation](http://purl.obolibrary.org/obo/FYPO_0006416) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "midori" - [abolished meiotic sister chromatid separation](http://purl.obolibrary.org/obo/FYPO_0006416) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "meiotic sister chromatid separation abolished" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - Class: [abolished meiotic sister chromatid separation](http://purl.obolibrary.org/obo/FYPO_0006416) - [abolished meiotic sister chromatid separation](http://purl.obolibrary.org/obo/FYPO_0006416) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([lacking processual parts](http://purl.obolibrary.org/obo/PATO_0001558) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [meiotic sister chromatid separation](http://purl.obolibrary.org/obo/GO_0051757)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) - [abolished meiotic sister chromatid separation](http://purl.obolibrary.org/obo/FYPO_0006416) SubClassOf [abnormal meiotic sister chromatid segregation](http://purl.obolibrary.org/obo/FYPO_0005509) ### decreased histone H3-K9 methylation at centromere inner repeat during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0008200` #### Added - [decreased histone H3-K9 methylation at centromere inner repeat during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008200) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 occurs to a lower extent than normal at the centromere inner repeat." - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:vw" ### decreased histone H3-K9 methylation at heterochromatin island during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0003230` #### Removed - [decreased histone H3-K9 methylation at heterochromatin island during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0003230) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 9 of histone H3 at the centromere inner repeat occurs to a lower extent than normal." ### equational sister chromatid separation at meiosis I `http://purl.obolibrary.org/obo/FYPO_0008202` #### Added - [equational sister chromatid separation at meiosis I](http://purl.obolibrary.org/obo/FYPO_0008202) [label](http://www.w3.org/2000/01/rdf-schema#label) "equational sister chromatid separation at meiosis I"@en - [equational sister chromatid separation at meiosis I](http://purl.obolibrary.org/obo/FYPO_0008202) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [equational sister chromatid separation at meiosis I](http://purl.obolibrary.org/obo/FYPO_0008202) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype in which meiotic sister chromatid separation occurs in meiosis I due to erroneous merotelic kinetochore attachment." - [equational sister chromatid separation at meiosis I](http://purl.obolibrary.org/obo/FYPO_0008202) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-04-26T17:07:28Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - Class: [equational sister chromatid separation at meiosis I](http://purl.obolibrary.org/obo/FYPO_0008202) - [equational sister chromatid separation at meiosis I](http://purl.obolibrary.org/obo/FYPO_0008202) SubClassOf [abnormal meiotic sister chromatid segregation](http://purl.obolibrary.org/obo/FYPO_0005509) ### sister chromatid nondisjunction at meiosis II `http://purl.obolibrary.org/obo/FYPO_0003182` #### Removed - [sister chromatid nondisjunction at meiosis II](http://purl.obolibrary.org/obo/FYPO_0003182) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "chromosome nondisjunction during meiosis II" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [sister chromatid nondisjunction at meiosis II](http://purl.obolibrary.org/obo/FYPO_0003182) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "chromosome nondisjunction at meiosis II" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [sister chromatid nondisjunction at meiosis II](http://purl.obolibrary.org/obo/FYPO_0003182) [label](http://www.w3.org/2000/01/rdf-schema#label) "unequal meiotic sister chromatid segregation in meiosis I" - [sister chromatid nondisjunction at meiosis II](http://purl.obolibrary.org/obo/FYPO_0003182) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "chromosome non-disjunction at meiosis II" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:vw" - [sister chromatid nondisjunction at meiosis II](http://purl.obolibrary.org/obo/FYPO_0003182) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([lacking processual parts](http://purl.obolibrary.org/obo/PATO_0001558) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [meiotic sister chromatid segregation](http://purl.obolibrary.org/obo/GO_0045144)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) #### Added - [sister chromatid nondisjunction at meiosis II](http://purl.obolibrary.org/obo/FYPO_0003182) [has_alternative_id](http://www.geneontology.org/formats/oboInOwl#hasAlternativeId) "FYPO:0006416" - [sister chromatid nondisjunction at meiosis II](http://purl.obolibrary.org/obo/FYPO_0003182) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "unequal meiotic sister chromatid segregation in meiosis II" - [sister chromatid nondisjunction at meiosis II](http://purl.obolibrary.org/obo/FYPO_0003182) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abolished meiotic sister chromatid separation" - [sister chromatid nondisjunction at meiosis II](http://purl.obolibrary.org/obo/FYPO_0003182) [label](http://www.w3.org/2000/01/rdf-schema#label) "sister chromatid nondisjunction at meiosis II" - [sister chromatid nondisjunction at meiosis II](http://purl.obolibrary.org/obo/FYPO_0003182) EquivalentTo [has_part](http://purl.obolibrary.org/obo/BFO_0000051) some ([lacking processual parts](http://purl.obolibrary.org/obo/PATO_0001558) and ([inheres_in](http://purl.obolibrary.org/obo/RO_0000052) some [meiotic sister chromatid separation](http://purl.obolibrary.org/obo/GO_0051757)) and ([qualifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) ### sister kinetochore dissociation in meiotic metaphase I with equational sister chromatid segregation in meiosis I `http://purl.obolibrary.org/obo/FYPO_0005634` #### Removed - [sister kinetochore dissociation in meiotic metaphase I with equational sister chromatid segregation in meiosis I](http://purl.obolibrary.org/obo/FYPO_0005634) SubClassOf [abnormal homologous chromosome segregation](http://purl.obolibrary.org/obo/FYPO_0004159) #### Added - [sister kinetochore dissociation in meiotic metaphase I with equational sister chromatid segregation in meiosis I](http://purl.obolibrary.org/obo/FYPO_0005634) SubClassOf [equational sister chromatid separation at meiosis I](http://purl.obolibrary.org/obo/FYPO_0008202) ### sister kinetochore dissociation in meiotic metaphase I, normal chromosome segregation in meiosis I, and sister chromatid non-disjunction in meiosis II `http://purl.obolibrary.org/obo/FYPO_0005633` #### Removed - [sister kinetochore dissociation in meiotic metaphase I, normal chromosome segregation in meiosis I, and sister chromatid non-disjunction in meiosis II](http://purl.obolibrary.org/obo/FYPO_0005633) [has_exact_synonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "premature kinetochore separation during meiosis I with unequal chromosome segregation at meiosis II" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:vw" - [sister kinetochore dissociation in meiotic metaphase I, normal chromosome segregation in meiosis I, and sister chromatid non-disjunction in meiosis II](http://purl.obolibrary.org/obo/FYPO_0005633) [label](http://www.w3.org/2000/01/rdf-schema#label) "sister kinetochore dissociation in meiotic metaphase I, normal chromosome segregation in meiosis I, and unequal sister chromatid segregation in meiosis II" - [sister kinetochore dissociation in meiotic metaphase I, normal chromosome segregation in meiosis I, and sister chromatid non-disjunction in meiosis II](http://purl.obolibrary.org/obo/FYPO_0005633) [has_related_synonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "abnormal chromosome segregation during meiosis I with split kinetochore, reductional chromosome separation, and unequal sister chromatid division" - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:mah" - [sister kinetochore dissociation in meiotic metaphase I, normal chromosome segregation in meiosis I, and sister chromatid non-disjunction in meiosis II](http://purl.obolibrary.org/obo/FYPO_0005633) SubClassOf [abnormal meiotic sister chromatid segregation](http://purl.obolibrary.org/obo/FYPO_0005509) #### Added - [sister kinetochore dissociation in meiotic metaphase I, normal chromosome segregation in meiosis I, and sister chromatid non-disjunction in meiosis II](http://purl.obolibrary.org/obo/FYPO_0005633) [label](http://www.w3.org/2000/01/rdf-schema#label) "sister kinetochore dissociation in meiotic metaphase I, normal chromosome segregation in meiosis I, and sister chromatid non-disjunction in meiosis II" - [sister kinetochore dissociation in meiotic metaphase I, normal chromosome segregation in meiosis I, and sister chromatid non-disjunction in meiosis II](http://purl.obolibrary.org/obo/FYPO_0005633) SubClassOf [sister chromatid nondisjunction at meiosis II](http://purl.obolibrary.org/obo/FYPO_0003182)
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```