pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
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closes #4532; closes #4530; closes #4529 #4534

Closed ValWood closed 2 months ago

github-actions[bot] commented 2 months ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments `http://purl.obolibrary.org/obo/FYPO_0008204` #### Added - [delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments](http://purl.obolibrary.org/obo/FYPO_0008204) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-04-27T08:11:22Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments](http://purl.obolibrary.org/obo/FYPO_0008204) [label](http://www.w3.org/2000/01/rdf-schema#label) "delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments"@en - [delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments](http://purl.obolibrary.org/obo/FYPO_0008204) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell exhibits randomly misoriented actin and myosin II filaments, eventually forming a regular orthogonal actomyosin contractile ring. Although the onset of filaments assembly is not delayed, the cell takes more time complete the formation of an orthogonal actomyosin contractile ring." - [delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments](http://purl.obolibrary.org/obo/FYPO_0008204) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - Class: [delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments](http://purl.obolibrary.org/obo/FYPO_0008204) - [delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments](http://purl.obolibrary.org/obo/FYPO_0008204) SubClassOf [delayed onset of actomyosin contractile ring assembly](http://purl.obolibrary.org/obo/FYPO_0000729) ### normal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth `http://purl.obolibrary.org/obo/FYPO_0008203` #### Added - [normal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008203) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-04-27T08:08:46Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [normal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008203) [label](http://www.w3.org/2000/01/rdf-schema#label) "normal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth"@en - [normal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008203) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [normal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008203) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 at the centromere inner repeat region is normal (i.e. indistinguishable from wild type)." - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "PomBase:vw" - Class: [normal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008203) - [normal histone H3-K9 trimethylation at centromere inner repeat during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0008203) SubClassOf [normal histone H3-K9 methylation at centromere inner repeat during vegetative growth](http://purl.obolibrary.org/obo/FYPO_0006683)
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```