pombase / fypo

Fission Yeast Phenotype Ontology
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PMID:37949217 #4549

Open ValWood opened 1 month ago

ValWood commented 1 month ago

In Δpqr1Δxpr1, abnormal invagination of the plasma membrane was frequently observed at high Pi (0, 33,and81%at0,8,and27hin500mMPi,and17%at27hin 300 mM Pi, respectively). In other strains, such invagination was not seen. In the invaginated space, probable cell wall materials were deposited, judging from CW staining, which detects polysaccharides. A similar phenotype was invoked by overexpression of Rga2, the Rho GAP, or by gene deletion of klf1+, a Krüppel-like transcription factor (49, 50).

ValWood commented 1 month ago
ValWood commented 1 month ago

Could not add logical def with new term

'has part' some (quality and (happens_during some 'single-celled organism vegetative growth phase') and ('characteristic of part of' some 'phosphate ion export across plasma membrane ') and ('has modifier' some abnormal))

so definitely the GO ontology part is not updating

ValWood commented 1 month ago

for some reason the free and total terms did not appear?

I need

ValWood commented 1 week ago

reopening I need to check which terms are required, and fix annotation (possible some terms to)