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pombase / fypo

Fission Yeast Phenotype Ontology
Creative Commons Attribution 4.0 International
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closes #4565 #4566

Closed ValWood closed 2 weeks ago

github-actions[bot] commented 2 weeks ago

Changes added to the edit file this PR

Click to expand # Ontology comparison ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/master/src/ontology/fypo-edit.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/fypo.owl` - Version IRI: *None* - Loaded from: `file:/__w/fypo/fypo/src/ontology/fypo-edit.owl` ### Ontology imports ### Ontology annotations ### abnormal nuclear morphology during meiosis I `http://purl.obolibrary.org/obo/FYPO_0005651` #### Removed - [abnormal nuclear morphology during meiosis I](http://purl.obolibrary.org/obo/FYPO_0005651) SubClassOf [abnormal nuclear morphology](http://purl.obolibrary.org/obo/FYPO_0002256) #### Added - [abnormal nuclear morphology during meiosis I](http://purl.obolibrary.org/obo/FYPO_0005651) SubClassOf [abnormal nuclear morphology during meiotic cell cycle](http://purl.obolibrary.org/obo/FYPO_0008242) ### abnormal nuclear morphology during meiotic cell cycle `http://purl.obolibrary.org/obo/FYPO_0008242` #### Added - [abnormal nuclear morphology during meiotic cell cycle](http://purl.obolibrary.org/obo/FYPO_0008242) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [abnormal nuclear morphology during meiotic cell cycle](http://purl.obolibrary.org/obo/FYPO_0008242) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A physical cellular phenotype in which the size, shape, or structure of the nucleus is abnormal during the meiotic cell cycle." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:vw" - [abnormal nuclear morphology during meiotic cell cycle](http://purl.obolibrary.org/obo/FYPO_0008242) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-06-17T12:42:06Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [abnormal nuclear morphology during meiotic cell cycle](http://purl.obolibrary.org/obo/FYPO_0008242) [label](http://www.w3.org/2000/01/rdf-schema#label) "abnormal nuclear morphology during meiotic cell cycle"@en - [abnormal nuclear morphology during meiotic cell cycle](http://purl.obolibrary.org/obo/FYPO_0008242) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "fission_yeast_phenotype" - Class: [abnormal nuclear morphology during meiotic cell cycle](http://purl.obolibrary.org/obo/FYPO_0008242) - [abnormal nuclear morphology during meiotic cell cycle](http://purl.obolibrary.org/obo/FYPO_0008242) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([morphology](http://purl.obolibrary.org/obo/PATO_0000051) and ([exists_during](http://purl.obolibrary.org/obo/GOREL_0000032) some [meiotic cell cycle](http://purl.obolibrary.org/obo/GO_0051321)) and ([characteristic of](http://purl.obolibrary.org/obo/RO_0000052) some [nucleus](http://purl.obolibrary.org/obo/GO_0005634)) and ([has modifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) - [abnormal nuclear morphology during meiotic cell cycle](http://purl.obolibrary.org/obo/FYPO_0008242) SubClassOf [abnormal nuclear morphology](http://purl.obolibrary.org/obo/FYPO_0002256) ### abnormal nuclear morphology during sporulation `http://purl.obolibrary.org/obo/FYPO_0008243` #### Added - [abnormal nuclear morphology during sporulation](http://purl.obolibrary.org/obo/FYPO_0008243) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-06-17T12:46:19Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [abnormal nuclear morphology during sporulation](http://purl.obolibrary.org/obo/FYPO_0008243) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A physical cellular phenotype in which the size, shape, or structure of the nucleus is abnormal during sporulation." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:vw" - [abnormal nuclear morphology during sporulation](http://purl.obolibrary.org/obo/FYPO_0008243) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "fission_yeast_phenotype" - [abnormal nuclear morphology during sporulation](http://purl.obolibrary.org/obo/FYPO_0008243) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - [abnormal nuclear morphology during sporulation](http://purl.obolibrary.org/obo/FYPO_0008243) [label](http://www.w3.org/2000/01/rdf-schema#label) "abnormal nuclear morphology during sporulation"@en - Class: [abnormal nuclear morphology during sporulation](http://purl.obolibrary.org/obo/FYPO_0008243) - [abnormal nuclear morphology during sporulation](http://purl.obolibrary.org/obo/FYPO_0008243) EquivalentTo [has part](http://purl.obolibrary.org/obo/BFO_0000051) some ([morphology](http://purl.obolibrary.org/obo/PATO_0000051) and ([exists_during](http://purl.obolibrary.org/obo/GOREL_0000032) some [ascospore formation](http://purl.obolibrary.org/obo/GO_0030437)) and ([characteristic of](http://purl.obolibrary.org/obo/RO_0000052) some [nucleus](http://purl.obolibrary.org/obo/GO_0005634)) and ([has modifier](http://purl.obolibrary.org/obo/RO_0002573) some [abnormal](http://purl.obolibrary.org/obo/PATO_0000460))) - [abnormal nuclear morphology during sporulation](http://purl.obolibrary.org/obo/FYPO_0008243) SubClassOf [abnormal nuclear morphology during meiotic cell cycle](http://purl.obolibrary.org/obo/FYPO_0008242) ### abolished protein localization to prospore wall `http://purl.obolibrary.org/obo/FYPO_0008244` #### Added - [abolished protein localization to prospore wall](http://purl.obolibrary.org/obo/FYPO_0008244) [has_obo_namespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "fission_yeast_phenotype" - [abolished protein localization to prospore wall](http://purl.obolibrary.org/obo/FYPO_0008244) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2024-06-17T12:50:50Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - [abolished protein localization to prospore wall](http://purl.obolibrary.org/obo/FYPO_0008244) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A cell phenotype in which a protein does not localize to, and is therefore absent from the prospore wall." - [database_cross_reference](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PomBase:vw" - [abolished protein localization to prospore wall](http://purl.obolibrary.org/obo/FYPO_0008244) [label](http://www.w3.org/2000/01/rdf-schema#label) "abolished protein localization to prospore wall"@en - [abolished protein localization to prospore wall](http://purl.obolibrary.org/obo/FYPO_0008244) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) "vw" - Class: [abolished protein localization to prospore wall](http://purl.obolibrary.org/obo/FYPO_0008244) - [abolished protein localization to prospore wall](http://purl.obolibrary.org/obo/FYPO_0008244) SubClassOf [abolished protein localization during meiotic cell cycle](http://purl.obolibrary.org/obo/FYPO_0005208)
# Changes to ontology after reasoner runs
Click to expand Coming soon >
# Errors reported ``` Level Rule Name Subject Property Value WARN missing_definition output_of definition WARN missing_definition preceded_by definition WARN missing_definition precedes definition INFO lowercase_definition has_output definition p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues. INFO missing_superclass phenotype rdfs:subClassOf ```