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pombase / pombase-chado

PomBase code for accessing Chado
MIT License
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entity "Type" in GO-export files #1134

Closed ValWood closed 8 months ago

ValWood commented 8 months ago

PomBase has used "gene product" for 8 lncRNAs:

Screenshot 2024-01-29 at 15 55 46

could we change this to lncRNA?

@kimrutherford

from https://github.com/geneontology/amigo/issues/713

cmungall commented 8 months ago

pombase GAF is fine:

✗ curl -L -s https://www.pombase.org/data/annotations/Gene_ontology/gene_association.pombase.gz | gzip -dc | grep sme2 | cut -f12 | sort -u
lncRNA

The issue is with the GO pipeline: https://github.com/geneontology/go-site/issues/2246