pombase / pombase-chado

PomBase code for accessing Chado
MIT License
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Find all synonym fields with spaces #1161

Closed ValWood closed 7 months ago

ValWood commented 8 months ago

List all synonym fields with spaces and session IDs

kimrutherford commented 8 months ago

allele_synonyms_with_spaces.csv

pmid session allele_name synonym
PB_REF:0000004 spt5-delta-CTD 1-835 deltaCTD
PMID:10373582 0ffa8093b9b4d8e5 rad32-1 rad32-D135N mre11-D135N
PMID:10574765 88d2e1acdc9993bc ral3-cor-C-GFP ral3-cor-C-GFP fusion
PMID:10930468 977c41e138dc2e0d mid1-delta1-506 mid1 1-506
PMID:12456004 a09d826a70b1a2d4 git7-93 duplication of codons 345 to 363
PMID:1314171 eb4340d44f575950 nhe1delta sod2delta neh1delta
PMID:14008 cc0a2203f689cfc8 dap1- dap 1
PMID:14008 cc0a2203f689cfc8 pur1- pur 1
PMID:15164362 54a26a25997d999a ntp1-CRE-like-promoter ntp1-CRE-like promoter mutant
PMID:15448137 65ee22c229c3e125 cgs2-p.CRE-mut cgs2-CRE promoter binding site mutant
PMID:15791259 d5580f5ec3f29d85 slp1(1-453) slp1 1-453
PMID:15791259 d5580f5ec3f29d85 slp1(166-488) slp1 166-488
PMID:16325501 bc9efc288e644f66 pmo25-2 T551TG,T616G(exon sequence)
PMID:16444015 affec7759847d81d his3- his3 mutant
PMID:16775007 574df5dbdb6edf7f sid4-ppc89 Sid4-Ppc89 fusion
PMID:17952063 223cbaaac1c064d0 pyp2deltaUTRs pyp2-no UTRs
PMID:18157149 0205e2ea9f154b73 ter1-B ter1-Mutant B
PMID:18223116 3dc265797d97f877 fep1-p.CCAAT fep1 CCAAT promoter mutant
PMID:18562692 c9f65982114faaaa act1-R183A,D184A act1-LatA resistant
PMID:18799626 d31bdd99cf204c6f klp5N/klp6C Klp5N/klp6C chimera
PMID:18799626 d31bdd99cf204c6f klp6N/klp5C Klp6N/Klp5C chimera
PMID:19371376 7a0e423521cbb7b4 ssp1-VEV431AAA,EV437AA ssp1-stretch Ala
PMID:19371376 7a0e423521cbb7b4 ssp1delta431-438 ssp1-stretch deletion
PMID:19487461 6c335a4e1d1a262d cdc13+ cdc13 switch-off
PMID:19915076 feedc5a07a1dde86 abc3-M1 GATA promoter mutant
PMID:19915076 feedc5a07a1dde86 abc3-M1,M2 GATA promoter mutant
PMID:19915076 feedc5a07a1dde86 abc3-M2 GATA promoter mutant
PMID:2046669 803cfb382ebb41c6 byr2delta(389-606) byr2-catalytic domain deleted
PMID:22150589 10205a1be0d30851 pdp1-deltaPWWP pdp1-delta-PWWP domain
PMID:22281223 4d4822dbe566aaac bub1-KD bub1-kinase dead
PMID:22281223 4d4822dbe566aaac mph1-kd mph1-kinase dead
PMID:22438582 5524d2f4237ade3e cut12-hrs1 cut12-hrs1 fusion
PMID:22438582 5524d2f4237ade3e pcp1-hrs1 pcp-hrs1 fusion
PMID:22438582 5524d2f4237ade3e plo1-sid4C plo1-sid4C fusion
PMID:22809626 cf4899040d72592d dma1-delta-RF dma1-delta-RF domain
PMID:22809626 cf4899040d72592d dma1delta-FHA dma1delta-FHA domain
PMID:22952839 8a099f2c6d1a0af1 swi1-DDT-h2 swi1-DDT h2
PMID:22952839 8a099f2c6d1a0af1 swi1-DDT-h3 swi1-DDT h3
PMID:23936074 c6ced0325cbf00af cnp1+ nmt41-CENP-A-Cnp1 nmt41-CENPA(cnp1+)
PMID:23936074 c6ced0325cbf00af cnp1+ nmt81-CENP-A-Cnp1 nmt81-CENPA(cnp1+)
PMID:24554432 ea5eb1c311e9f19d cdr2-tea4N tea4N-cdr2 fusion
PMID:24554432 ea5eb1c311e9f19d ppc89-GFP-tea4 tea4-pcp89 fusion
PMID:24831008 bf037075feb20f28 loz1+ loz1+ zhf1 promoter
PMID:25103238 7f17aec8a060844d cut11-2 cut11-3 cut11-4
PMID:25203555 ad3cea5e630841a3 pxd1delta108-226 pxd1deltaM pxd1-deltaM
PMID:25240800 f2202f3e99350d80 dis3-endo- dis3 endo-
PMID:25240800 f2202f3e99350d80 dis3-endo-exo- dis3 endo- exo-
PMID:25240800 f2202f3e99350d80 dis3-exo- dis3 exo-
PMID:25240800 f2202f3e99350d80 rrp41-co rrp41 channel-occluded
PMID:2537310 dfcd11b5fda97a5f top1- top1 mutant
PMID:2537310 dfcd11b5fda97a5f top2- top2 mutant
PMID:25724335 3ae02f9ef40a096c aco2(1-811) aco2-aconitase domain only
PMID:25724335 3ae02f9ef40a096c aco2(807-902) aco2-ribosomal-domain only
PMID:25724335 3ae02f9ef40a096c aco2-RDdeltaNLS aco2-MTS+ribosomal domain
PMID:25733668 d17a6f8397b4b058 shu1-M1-GATA-box-mutant shu1-M1 GATA box mutant
PMID:26137436 8b8d3cc2e5f5c371 nup189(uncleavable) nup98-nup96 (uncleavable)
PMID:26137436 8b8d3cc2e5f5c371 nup189(unspliced) nup98-nup96 (unspliced)
PMID:26137436 8b8d3cc2e5f5c371 nup189(unspliced-uncleavable) nup98-nup96 (unspliced and uncleavable)
PMID:26527280 f8b9e68a8b938c8d cut2+ cut2-GFP OE
PMID:26696398 393d0a5aae35d3ac his7- his7 mutant
PMID:27655872 1edc814df6ff1176 sre2-MS+G772L,N773L,Y774L sre2-MS+ G772L,N773L,Y775L
PMID:27811944 3cb710700bc0a9b7 sre1-ERG sre1 ERG
PMID:27811944 3cb710700bc0a9b7 sre1-WY sre1 WY
PMID:28366743 cb1516626fc1f680 slp1+ slp1+(cohesin promoter)
PMID:28552615 205df3a82b504d79 rrp2deltaRING rrp2-RING deletion
PMID:28572514 bc974ef58d58c8aa sod1-H64A sod1 H64A
PMID:28821619 bea1c1e13005750d cdc48-E319K ntG1029A cdc48-8
PMID:2908246 9e29d45d34f5263a cdc13-delta785-1599nt cdc13 disruption
PMID:29083304 54b4f3fa56c4718d rps23-deltaN(1-46) rps23-deltaN-terminal extension domain
PMID:29083304 54b4f3fa56c4718d rps23deltaN(1-23) rps23-N-terminal deletion
PMID:29352077 865ebc50ec806a07 cdc48-353 cdc48-G338D cdc48-G332D
PMID:29735656 16ad711046a3f839 cut2-364 cut2-R267->stop cut2-R262*
PMID:29813053 6788fbad2542709a cdc15-gc1 cdc15-GFP cdc15-hypomorph
PMID:30640914 6e5ece46806fb848 rec14-cdk-site1,2 rec14-cdk1 cdk2
PMID:30640914 6e5ece46806fb848 rec7-cdk-site1,2 rec7-cdk1 cdk2
PMID:30759079 23ea57b8910e06c0 cdk9-T212A cdk9 T loop
PMID:31257143 0cfe17c3c16e2b0c TetR-bub1 TetR-bub1-WT fusion
PMID:31257143 0cfe17c3c16e2b0c TetR-bub1-CD1 TetR-bub1-CD1 fusion
PMID:31257143 0cfe17c3c16e2b0c TetR-bub1-N700delta TetR bub1deltakinase fusion
PMID:31257143 0cfe17c3c16e2b0c TetR-bub1-N700delta TetR-bub1-N700delta fusion
PMID:31257143 0cfe17c3c16e2b0c TetR-bub1-TPR TetR-bub1-TPR fusion
PMID:31257143 0cfe17c3c16e2b0c TetR-bub1N TetR-bub1-N terminus fusion
PMID:31257143 0cfe17c3c16e2b0c TetR-mps1 TetR-mps1-WT fusion
PMID:31941401 cd18b7b226e58591 atg38-F178A,V181A atg38-[AIM mut]
PMID:31941401 cd18b7b226e58591 atg8-P52A,R67A atg8[AB mut]
PMID:32319721 e630ab034081e15c pyk1-T343A pyk1-high activity allele
PMID:32361273 9b6d37d028f7da71 rum1-BM1AA rum1 BM1 AA
PMID:32892625 3232c9219ab0f2d2 ain1-L2-R5A ain1 L2-R5A
PMID:32892625 3232c9219ab0f2d2 ain1-L2-R5E ain1 L2-R5E
PMID:33176152 96b76559a6d410c0 hsf1+ purg1-hsf1 OFF
PMID:33670267 4ca3e303dba088f4 hrp3-deltaSANT Delta SANT domain
PMID:33670267 4ca3e303dba088f4 hrp3-deltaSLIDE Delta SLIDE domain
PMID:33670267 4ca3e303dba088f4 hrp3-deltachromo Delta CHROMO domain
PMID:33670267 4ca3e303dba088f4 hrp3-deltacoupling_region Delta COUPLING region
PMID:34086083 ebc037f099adf95b rst2-C2H2delta rst2 (C2H2delta)
PMID:34389684 67f8ea3e5c1c1bfc rpb1-CTD-P3A(r2-r29) rpb1-P3.P3A rpb1-CTD-P3.P3A rpb1-P3-P3A(1-29)
PMID:34967420 af39cc71da933c2d thi20-G271D SPBP8B7.17c Gly271Asp
PMID:35012333 4228fd893e7a1a88 gde1-E846A,D848A gde1-(met1)E845A,D847A gde1-(met1)E845A-D847A
PMID:35012333 4228fd893e7a1a88 gde1-H811A,R812A gde1-(met1)H810A,R811A gde1-(met1)H810A-R811A
PMID:35012333 4228fd893e7a1a88 gde1-Y22F,K26A,N140A gde1-(met1)Y21F,K25A,N139A gde1-(met1)Y21F-K25A-N139A
PMID:35012333 4228fd893e7a1a88 rpb1-CTD-S5A(r2-r29) rpb1-S5-S5A(1-29) rpb1-CTD-S5A(r2-r29-2)
PMID:36361590 f45b7c9c20201a38 gpl1(C)259-534 gpl1(C): 259â534
PMID:36361590 f45b7c9c20201a38 gpl1(M)111-259 gpl1(M): 111â259
PMID:36361590 f45b7c9c20201a38 gpl1(N)1-110 gpl1(N): 1-110
PMID:37788281 aee38813cc53380f sam2 pka1 C358Y
PMID:7791776 ef2da839886aa260 fus1-deltaTR1 fus1-TR1 deleted
PMID:7791776 ef2da839886aa260 fus1-deltaTR2 fus1-TR2 deleted
PMID:9003326 621ee5f0491cf6af mat2-Pc- mat1-PC JM161
PMID:9321395 37af2321f43c3188 wis4deltaN1-958,K1066R wis4-deltaN terminus,K1066R
PMID:9514947 67fc6a2ee3c6c565 byr2-delta(88-151) disrupted RBD domain
ValWood commented 7 months ago

OK I will fix PMID:35012333 4228fd893e7a1a88 rpb1-CTD-S5A(r2-r29) rpb1-S5-S5A(1-29) rpb1-CTD-S5A(r2-r29-2) PMID:35012333 4228fd893e7a1a88 gde1-E846A,D848A gde1-(met1)E845A,D847A gde1-(met1)E845A-D847A PMID:35012333 4228fd893e7a1a88 gde1-H811A,R812A gde1-(met1)H810A,R811A gde1-(met1)H810A-R811A PMID:35012333 4228fd893e7a1a88 gde1-Y22F,K26A,N140A gde1-(met1)Y21F,K25A,N139A gde1-(met1)Y21F-K25A-N139A PMID:34389684 67f8ea3e5c1c1bfc rpb1-CTD-P3A(r2-r29) rpb1-P3.P3A rpb1-CTD-P3.P3A rpb1-P3-P3A(1-29) PMID:23936074 c6ced0325cbf00af cnp1+ nmt41-CENP-A-Cnp1 nmt41-CENPA(cnp1+) PMID:23936074 c6ced0325cbf00af cnp1+ nmt81-CENP-A-Cnp1 nmt81-CENPA(cnp1+) PMID:10373582 0ffa8093b9b4d8e5 rad32-1 rad32-D135N mre11-D135N PMID:1314171 eb4340d44f575950 nhe1delta sod2delta neh1delta

that isn't too bad!

Also move PMID:12456004 a09d826a70b1a2d4 git7-93 duplication of codons 345 to 363

to allele comment

ValWood commented 7 months ago

OK, I think I fixed the problems