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pombase / pombase-chado

PomBase code for accessing Chado
MIT License
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Remove code for reading exogenous_promoter from Canto JSON #1163

Closed kimrutherford closed 5 months ago

kimrutherford commented 5 months ago

See: pombase/canto#2823 and pombase/website#2161

We also need to remove the code that associates promoter genes with the publication to avoid extra publications in the Literature section.

Then test that we have 239 values of promoter_gene for feature_relationshipprop:

select * from feature_relationshipprop
   where type_id in (select cvterm_id from cvterm where name = 'promoter_gene');
kimrutherford commented 5 months ago

Remove code for reading exogenous_promoter from Canto JSON

This is done but I won't push the code changes until I've applied the Canto changes at the weekend.

kimrutherford commented 5 months ago

All done.

ValWood commented 5 months ago

Thanks, this has been another long project! .....it is much better for phenotype integration