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pombase / pombase-chado

PomBase code for accessing Chado
MIT License
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malformed GO annotations #1168

Closed ValWood closed 6 months ago

ValWood commented 6 months ago

These only have a partial "with filed" but don't appear to be reported in any logs:

PomBase SPCC970.03 GO:0016653 GO_REF:0000024 ISO SGD: F XXXX protein taxon:4896 20220314 PomBase has_input(PomBase:SPAC8F11.02c),part_of(GO:0002098) PomBase SPCC970.03 GO:0004128 GO_REF:0000024 ISO SGD: F XXXX protein taxon:4896 20220314 PomBase has_input(PomBase:SPBC29A10.16c),part_of(GO:0006696)
PomBase SPCC970.03 GO:0004128 GO_REF:0000024 ISO SGD: F XXXX protein taxon:4896 20220314 PomBase has_input(PomBase:SPCC16A11.10c),part_of(GO:0006696)
PomBase SPCC970.03 GO:0006696 GO_REF:0000024 ISO SGD: P XXXX protein taxon:4896 20240504 PomBase

ValWood commented 6 months ago

I will fix once they are logged so you can test

kimrutherford commented 6 months ago

I've added a check for that problem but not in time for the load. There should be warnings in the legacy GO log file on Friday morning.

kimrutherford commented 6 months ago

I will fix once they are logged so you can test

Thanks. The new warning works:

https://curation.pombase.org/dumps/builds/pombase-build-2024-05-10/logs/log.2024-05-09-21-20-23.legacy_go_from_contigs

ValWood commented 6 months ago

thanks, annotations fixed.