confusing log file

[pombase-admin]

This log file about GAF contents refers to evidence codes that we don't use for GO?

reading go_comp.txt no taxon filter - annotation will be loaded for all taxa counts: count | value
-------+------------------------------------------------------------------------ 1 | Inferred from Key Residues 4 | quantitative PCR 6 | RNA protection assay evidence 22 | reporter gene assay evidence 30 | reverse transcription polymerase chain reaction transcription evidence 45 | Western blot evidence 170 | Inferred from Expression Pattern 191 | experimental evidence 239 | competitive growth assay evidence 276 | Northern assay evidence 729 | inferred from Reviewed Computational Analysis 964 | Inferred from Genetic Interaction 1015 | Traceable Author Statement 1143 | Inferred from Physical Interaction 1364 | expression microarray evidence 1507 | Inferred by Curator 1567 | Inferred from Sequence Model 2525 | Non-traceable Author Statement 2571 | Inferred from Sequence or Structural Similarity 2596 | Inferred from Direct Assay 3113 | Inferred from Mutant Phenotype 4828 | Microscopy 6553 | Inferred from Sequence Orthology

Original comment by: ValWood

[pombase-admin]

file is: http://curation.pombase.org/dumps/pombase-chado-v38-2013-10-06/logs/log.2013-10-08-06-37-23.gaf-load-output

Original comment by: ValWood

[pombase-admin]

Sorry, I added that for debugging and left it in without explaining it.

The counts are the total counts for all annotation types at each stage of the load. I added it so that I could see how the evidence counts changed after each GAF file load.

Original comment by: kimrutherford

[pombase-admin]

• Labels: --> logs

Original comment by: mah11

[pombase-admin]

• status: open --> closed-works-for-me

Original comment by: ValWood