Closed pombase-admin closed 9 years ago
It seems as thought the problem could be in the loading script? v
Original comment by: ValWood
It's "FYP:0002148" in this line of one_line_per_annotation:
SPAC1002.09c FYP:0002148,PECO:0000005,has_penetrance(FYPO_EXT:0000001),has_expressivity(FYPO_EXT:0000003)
Original comment by: kimrutherford
Original comment by: mah11
Original comment by: ValWood
doh, so obvious.
Original comment by: ValWood
http://curation.pombase.org/dumps/pombase-build-2013-12-16-v5-l1/logs/log.2013-12-18-11-37-47.phenotypes_from_PMID_23697806-phenotype_mapping
find_cvterm_by_term_id failed: no Db found with name 'FYP' Failed to load line 17: DBIx::Class::Schema::txn_do(): no Db found with name 'FYP' at /home/kmr44/git/pombase-chado/lib/PomBase/Import/PhenotypeAnnotation.pm line 246
I can't find anything in the file with 'FYP' but not 'FYPO'
val
Original comment by: ValWood