Closed pombase-admin closed 9 years ago
Original comment by: kimrutherford
Kim will put this file in the logs and I will eyeball it every so often and fix the problems,
Original comment by: ValWood
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You probably don't remember this, but when we parse the "controlled curation" from the contigs, anything which s not an ortholog, or does not have a prefix like:
gene expression,
Original comment by: ValWood
I've added this to the load script. A file with the suffix ".protein_family_term_annotation" will be written at the end of the load.
Original comment by: kimrutherford
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You probably don't remember this, but when we parse the "controlled curation" from the contigs, anything which s not an ortholog, or does not have a prefix like:
gene expression,
name description,
Original comment by: ValWood
yay!
Original comment by: ValWood
You probably don't remember this, but when we parse the "controlled curation" from the contigs, anything which s not an ortholog, or does not have a prefix like: gene expression, name description,
defaults to the pombe specific protein family 'classifier'
this means that occasionally I spot random things in this section, for instance the name description for iss10 PBO:0014253 Insertional Suppressor of Sme2 http://www.pombase.org/spombe/result/SPAC7D4.14c#translation
if I had a list of these PBOs I could just check it through for anomalies
Original comment by: ValWood