list of PBO terms which default to protein family

[pombase-admin]

You probably don't remember this, but when we parse the "controlled curation" from the contigs, anything which s not an ortholog, or does not have a prefix like: gene expression, name description,

defaults to the pombe specific protein family 'classifier'

this means that occasionally I spot random things in this section, for instance the name description for iss10 PBO:0014253 Insertional Suppressor of Sme2 http://www.pombase.org/spombe/result/SPAC7D4.14c#translation

if I had a list of these PBOs I could just check it through for anomalies

Original comment by: ValWood

[pombase-admin]

Update: https://www.dropbox.com/s/22doauamj3z5ejb/all_domains_and_families%2Bgenes-sorted-used-2014-08-21.tsv?dl=0

Original comment by: kimrutherford

[pombase-admin]

Kim will put this file in the logs and I will eyeball it every so often and fix the problems,

Original comment by: ValWood

[pombase-admin]

• Description has changed:

Diff:

--- old
+++ new
@@ -1,4 +1,3 @@
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 You probably don't remember this, but  when we parse the "controlled curation" from the contigs, anything which s not an ortholog, or does not have a prefix like:
 gene expression,

• Priority: 5 --> 8

Original comment by: ValWood

[pombase-admin]

I've added this to the load script. A file with the suffix ".protein_family_term_annotation" will be written at the end of the load.

Original comment by: kimrutherford

[pombase-admin]

• Description has changed:

Diff:

--- old
+++ new
@@ -1,4 +1,3 @@
-
 You probably don't remember this, but  when we parse the "controlled curation" from the contigs, anything which s not an ortholog, or does not have a prefix like:
 gene expression,
 name description,

• status: open --> closed-fixed

Original comment by: ValWood

[pombase-admin]

yay!

Original comment by: ValWood