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pombase / pombase-chado

PomBase code for accessing Chado
MIT License
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IEA's missing from current gaf... #601

Closed ValWood closed 7 years ago

ValWood commented 7 years ago

grep IEA pombase-build-2016-12-12-v1.gaf |wc 6
(TFIIEA)

kimrutherford commented 7 years ago

I think I've fixed this. Unfortunately the GOA GAF load has been failing since I changed to doing a nightly load. Should be fixed in tonight's load.

kimrutherford commented 7 years ago

GOA GAF load has been failing

It was completely failing so no GOA annotation has been in PomBase v2.

ValWood commented 7 years ago

not back yet: 250 EXP 1699 IC 13493 IDA 54 IEP 1 IGC 840 IGI 1 IKR 5753 IMP 1795 IPI 1398 ISM 6632 ISO 1668 ISS 1216 NAS 2947 ND 4 RCA 427 TAS

ValWood commented 7 years ago

Midori did you re-annote the RCA? that dropped a lot?

ValWood commented 7 years ago

Actually its been that low for ages May_2013 Oct2014 Dec2014 Jan2015 Feb15 Mar15 June 16 RCA 510 482 504 505 - 505 4

I must have forgotten......

kimrutherford commented 7 years ago

not back yet:

I've only made the fixed today so it won't change until tonight's load.

kimrutherford commented 7 years ago

The load was failing for a few days but it worked last night. The are now 4180 IEAs in the PomBase GAF file.

ValWood commented 7 years ago

yep, that looks spot on.