logs should report incorrect use of with /from

pombase / pombase-chado

PomBase code for accessing Chado

MIT License

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logs should report incorrect use of with /from #648

Closed ValWood closed 6 years ago

ValWood commented 6 years ago

"from" is only allowed with IC

spotted fex1:

report iso from

mah11 commented 6 years ago

I have found and fixed a couple more. In case it's useful for log-generating purposes, the offending bit was this from chromosome1.contig:

FT                   /GO="aspect=F; term=siderophore transmembrane transporter
FT                   activity; GOid=GO:0015343; evidence=ISO;
FT                   from=SGD:S000001032; db_xref=GO_REF:0000024;
FT                   date=20160811"
FT                   /GO="aspect=P; term=siderophore transport;
FT                   GOid=GO:0015891; evidence=ISO; from=SGD:S000001032;
FT                   db_xref=GO_REF:0000024; date=20160811"

ValWood commented 6 years ago

Hi @kimrutherford was this covered when you made recent additional checks on the artemis data loaded?

ValWood commented 6 years ago

Judging by this,

mRNA SPAC222.19.1: ISS must have a "with=": failed to load qualifier 'aspect=P; term=regulation of TOR signaling; GOid=GO:0032006; evidence=ISS; db_xref=GO_REF:0000111; from=GO:0071986; date=20180213' from SPAC222.19.1:

it now does, so closing!