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PomBase website v2
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Multi-dataset graphs in JBrowse (consider Topoview) #1062

Open kimrutherford opened 5 years ago

kimrutherford commented 5 years ago

I didn't know this was possible. Is it useful for any of our datasets?

jbrowse-multi-line-1

I found this at SGD:

https://browse.yeastgenome.org/?loc=chrIV%3A585479..589852&tracks=h2ak5ac_0_to_60_mins%2Ch2as129ph_0_to_60_mins%2Ch3k36me_0_to_60_mins%2Ch3k36me3_0_to_60_mins%2CH2AZ_Nucleosome_positions%2CRec8-ChIP-seq&highlight=

ValWood commented 5 years ago

I think we should def. use this for datasets with multiple repeats, for starters. Possibly others too....

ValWood commented 5 years ago

@Antonialock should experimental repeats change to use this view?

Antonialock commented 5 years ago

Spontaneously, that seems cool.

Here is example data with repeats

Screenshot 2019-11-29 at 12 29 18

I'll ask Jurgs group

ValWood commented 2 years ago

I think TopoView will replace this....

https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac035/6546290?login=false

ValWood commented 7 months ago

this has moved on!

Screenshot 2024-04-23 at 13 15 04