pombase / website

PomBase website v2
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Update gene characterization history #1983

Closed ValWood closed 1 year ago

ValWood commented 1 year ago

we need to update the gene chracterization history page Kim could you add the current totals as the end of 2022

https://www.pombase.org/status/gene-characterisation-statistics-history it's supposed to be a year end snapshot of https://www.pombase.org/status/gene-characterisation but sometimes the dates are a bit random.

Even though the data types are a bit orthogonal, I'm quite attached to this data. Its what I used for https://royalsocietypublishing.org/doi/10.1098/rsob.180241 figure 1 It's a useful snapshot

@manulera these classes come from the /colour labels in the contig files, so maybe you could pull out the numbers for each year end?

/colour=2 =published /colour=7 =inferred role /colour=10 = conserved unknown role /colour=8 = uncharacterized S. pombe specific /colour= 12 = uncharacterized Schizosaccharomyces specific (until Aug 2014 colour 12 was not used and colour 8 covered 8&12)

kimrutherford commented 1 year ago

Kim could you add the current totals as the end of 2022

Done for tonight's load.

manulera commented 1 year ago

This is only for CDSs, right?

ValWood commented 1 year ago

yes, this is CDS only.

manulera commented 1 year ago

Is this something we wanted to include in the things that are ran overnight? Or since it is a once a year thing we just do it like we have so far? If so we can close I think

ValWood commented 1 year ago

Yep

ValWood commented 1 year ago

@ValWood Provide table

manulera commented 1 year ago

Related to https://github.com/pombase/website/issues/2048#event-9594666043