Closed ValWood closed 1 year ago
Kim could you add the current totals as the end of 2022
Done for tonight's load.
This is only for CDSs, right?
yes, this is CDS only.
Is this something we wanted to include in the things that are ran overnight? Or since it is a once a year thing we just do it like we have so far? If so we can close I think
Yep
@ValWood Provide table
we need to update the gene chracterization history page Kim could you add the current totals as the end of 2022
https://www.pombase.org/status/gene-characterisation-statistics-history it's supposed to be a year end snapshot of https://www.pombase.org/status/gene-characterisation but sometimes the dates are a bit random.
Even though the data types are a bit orthogonal, I'm quite attached to this data. Its what I used for https://royalsocietypublishing.org/doi/10.1098/rsob.180241 figure 1 It's a useful snapshot
@manulera these classes come from the /colour labels in the contig files, so maybe you could pull out the numbers for each year end?
/colour=2 =published /colour=7 =inferred role /colour=10 = conserved unknown role /colour=8 = uncharacterized S. pombe specific /colour= 12 = uncharacterized Schizosaccharomyces specific (until Aug 2014 colour 12 was not used and colour 8 covered 8&12)