search

pombase / website

PomBase website v2
MIT License
6 stars 1 forks source link

Add 'secondary structure' track to protein feature viewer #2176

Open ValWood opened 1 month ago

ValWood commented 1 month ago

Pdb uses PROMOTIF, we shoud use the same.

see https://www.rcsb.org/sequence/4ro1

kimrutherford commented 1 month ago

Do we need to include that in PomBase? How much of PDB should we include in the protein feature viewer when it's easy to link to PDB?

ValWood commented 1 month ago

I think only the ones we identified. Secondry structure is a fairly generic thing. Actually, getting this from Noctus maybe wouldn't work because they will only have it for proteins with structures, and if we show it, we would like it for every protein. The reason this would be nice in PomBase is mainly because in the absence of a good structure, it can help in designing mutants etc. (and to see where existing mutants reside wrt 2ndry structure).

Its very non-urgent but a nice feature if not too time consuming. No other MODs seem to display it...

kimrutherford commented 1 month ago

Moved to website issue tracker