Show source/evidence for features onmouse over

[ValWood]

I think we should add this. It seems a bit odd not to....

[kimrutherford]

Some of the features from UniProt have an evidence qualifier that includes a PubMed ID:

/evidence="ECO:0000269|PubMed:18257517"

In that case we should use that as the reference instead of the UniProt paper.

[ValWood]

Yes definitely but that links to the comment in this this ticket:

"First, I think we need to extend our MOD data format file to include an "assigned by" column so that all of these have "assigned_by" UniProt"

so that we can capture the experimental source, and the source of the curation.

[kimrutherford]

First, I think we need to extend our MOD data format file to include an "assigned by" column so that all of these have "assigned_by" UniProt

I've implemented that for the annotations created directly from the UniProt data file. That's the lipidation sites, glycosylation sites, disulfide bonds and modifications from pombe-embl/external_data/uniprot_data_from_api.tsv.

Those annotations will have the assigned_by "UniProt" property in Chado from Wednesday.

There are also some UniProt annotations that were put in pombe-embl/supporting_files/manual_so_term_annotations.tsv. I need to do a bit investigation with SVN to work out which came from UniProt. I'll do that next.

After that I'll work on display the assigned_by in the display.

[kimrutherford]

There are also some UniProt annotations that were put in pombe-embl/supporting_files/manual_so_term_annotations.tsv. I need to do a bit investigation with SVN to work out which came from UniProt. I'll do that next.

I've now added an "Assigned_by" column to manual_so_term_annotations.tsv and filled it in as best I can. And I've changed the loading code to store that value in Chado.

[kimrutherford]

The code for showing the assigned by in a mouse-over in the protein feature table was added a few years ago. I'll add the same information to the protein feature viewer mouse-overs today.