downloads static page

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curators discuss organization of downloads page documentation, slides etc, ftp, chado etc

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ftp://ftp.pombase.org

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Datasets

• [x] DNA and protein sequence FASTA (genome, CDS, UTR, intron)

• [x] sequence and features GFF, Artemis files

• [x] Coordinates CDS, exons…

• [x] Protein features peptide features, properties

• [x] GO annotation Gene ontology annotation files

• [x] Phenotype annotations FYPO phenotype annotation files - complete annotation set (PHAF) or viability summary

• [x] Modifications Protein modification data file (RNA modifications to be added in future; ftp)

• [x] Macromolecular complexes Subunits of protein and ribonucleoprotein complexes (GO cellular component terms and annotated genes; ftp)

• [x] Orthologs Manually curated ortholog sets for human and S. cerevisiae

• [x] Identifiers? Whatever we called this???Mappings of CDS (protein coding sequence) by systematic ID to gene names or UniProt accession numbers

• [x] HCPIN datasets Physical interaction and GO substrate data that make up the High Confidence Physical Interaction Network datasets (ftp)

• [x] Telomeres Telomeric sequence

• [x] Centromeres Centromeric sequence and maps

• [x] Mating Type Region Links to genome browser for 972 h- (chromosome 2 coordinates) and h+ (mating region contig)

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Documents can stay as it is

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all there