kimrutherford
commented
6 years ago I've added this now (I think). I've implemented it in the same way as the component list - the terms at the top of your list have the highest priority. I generated a random colour palette and some of them are a bit nasty.
The configuration is in pombe-embl/website/pombase_v2_config.json. Look for this section:
"query_data_config": {
"go_components": [
"GO:0005634", "GO:0005783", "GO:0005739", "GO:0005737"
],
"go_process_superslim": [
"GO:0023052", "GO:0010467", "GO:0006338", "GO:0006457", "GO:0044085",
"GO:0006259", "GO:0007049", "GO:0007010", "GO:0061024", "GO:0051640",
"GO:0006629", "GO:0044281", "GO:0006091", "GO:0006810", "GO:0044248",
"GO:0098754"
],
"ortholog_presence_taxonids": [9606, 4932]
},If you make edits the change will appear the next day. If you let me know when you commit changes, I'll look out for problems.
It's currently called "go_process_superslim" internally because I thought that sounds cool.
ValWood
we'll begin with this 'superslim for processes' Because they need to be mutually exclusive the higher position in the list trumps (I will probably refine but this gives the most coverage right now (all but 182 genes with processes)
signaling (GO:0023052) > gene expression (GO:0010467) > chromatin remodeling (GO:0006338)> protein folding (GO:0006457)> cellular component biogenesis (GO:0044085) > DNA metabolic process (GO:0006259)> cell cycle (GO:0007049) > cytoskeleton organization (GO:0007010) > membrane organization (GO:0061024) > organelle localization (GO:0051640) > lipid metabolic process (GO:0006629) > small molecule metabolic process (GO:0044281) > generation of precursor metabolites and energy (GO:0006091) > transport (GO:0006810) > cellular catabolic process (GO:0044248) > detoxification (GO:0098754) other (i.e none of the above)