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pontikos-lab / Relayer

Web app for segmenting OCT Scans
GNU Affero General Public License v3.0
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Matlab analysis on Phenotips #18

Closed IsmailM closed 6 years ago

IsmailM commented 6 years ago

@pontikos

What do you think is the best way to get matlab running on phenotips?

Do you think we can install the linux version using -X or -Y? (requires a few GB for the installation).

Another option is to have a fake binary (a sh script) that ssh'es into CS and runs the analysis - will be a lot harder than that in reality as one would need to think about sending inputs via SSH etc. and getting back the response (potentially via sshfs)...

pontikos commented 6 years ago

I think it will need to be farmed off to the cluster as you suggested using 'ssh -t'. I don't think running matlab on phenotips is feasible and will slow down too much our other servers? Network drives can be mounted on phenotips, so the data could be read/written out to such a location? I have a fellowship deadline on the 5th of December so can't work on this before then.

On Wed, 29 Nov 2017 at 09:36 Ismail Moghul notifications@github.com wrote:

@pontikos https://github.com/pontikos

What do you think is the best way to get matlab running on phenotips?

Do you think we can install the linux version using -X or -Y? (requires a few GB for the installation).

Another option is to have a fake binary (a sh script) that ssh'es into CS and runs the analysis - will be a lot harder than that in reality as one would need to think about sending inputs via SSH etc. and getting back the response (potentially via sshfs)...

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/IsmailM/Relayer/issues/18, or mute the thread https://github.com/notifications/unsubscribe-auth/ADrG9PadYvEmOCYRoysaexcxuYcby7I8ks5s7SW2gaJpZM4QuqlZ .

pontikos commented 6 years ago

We are now running everything on neuromancer with an ssh tunnel from phenotips to neuromancer.